miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 181927 0.84 0.087794
Target:  5'- -gCCGCCAcCGCCGCCGCCACagGUCCGc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUG--CAGGU- -5'
16077 3' -61 NC_004065.1 + 162885 0.74 0.349416
Target:  5'- cGUCCGCgAUCGCguccaggCGCgCGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGgUAGCG-------GCG-GUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 149877 0.74 0.357541
Target:  5'- -cCCGUCGUCaGCCGCCucuGCCGCG-CCAg -3'
miRNA:   3'- caGGCGGUAG-CGGCGG---UGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 56985 0.66 0.814178
Target:  5'- aUCCugaugGCCGUgGCCGCCaugagagcACCGCaUCCGa -3'
miRNA:   3'- cAGG-----CGGUAgCGGCGG--------UGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 120902 0.79 0.182607
Target:  5'- -cCCGCCGUCcCCGCCACCucCGUCCc -3'
miRNA:   3'- caGGCGGUAGcGGCGGUGGu-GCAGGu -5'
16077 3' -61 NC_004065.1 + 161861 0.79 0.191424
Target:  5'- cUCCGUCGcgcgCGCCGCCgcgaucACCGCGUCCAg -3'
miRNA:   3'- cAGGCGGUa---GCGGCGG------UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 162356 0.79 0.191424
Target:  5'- -cCCGCCGcCGCCGCCGCCGC-UCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 81385 0.78 0.220143
Target:  5'- uGUUCGCCAUCgaGUCGCUGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGGUAG--CGGCGGUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 95144 0.75 0.294976
Target:  5'- aGUCCGUagcgacaguucuCGUCGCCGCCGCCgugcaGgGUCCAg -3'
miRNA:   3'- -CAGGCG------------GUAGCGGCGGUGG-----UgCAGGU- -5'
16077 3' -61 NC_004065.1 + 66391 0.74 0.342866
Target:  5'- -gCUGCCGcCGCCGCCGCCGCucgaUCCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGc---AGGU- -5'
16077 3' -61 NC_004065.1 + 151445 0.75 0.314838
Target:  5'- -cCCGCCGUCGCUGUUGCCACuGUCg- -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUG-CAGgu -5'
16077 3' -61 NC_004065.1 + 195920 0.76 0.258208
Target:  5'- uUCUGCCGgcgcuuuaUCGCCGaUCACCugGUCCAg -3'
miRNA:   3'- cAGGCGGU--------AGCGGC-GGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 205175 0.81 0.140286
Target:  5'- -gCCGCCGUCGCCGCCaacaucgggcGCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCGGCGG----------UGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 161438 0.75 0.321679
Target:  5'- uGUCggCGCUcuggAUCGCCGCCGCCGCGUUg- -3'
miRNA:   3'- -CAG--GCGG----UAGCGGCGGUGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 61466 0.8 0.147247
Target:  5'- -cCCGCUGUCGCCGCCGCCGCcgcugCCAc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 102892 0.77 0.241273
Target:  5'- -gCCGCCGguagCGCCGCCGCCGCGa--- -3'
miRNA:   3'- caGGCGGUa---GCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 200055 0.75 0.328631
Target:  5'- -gCCGCCGcCGCCGCCGCCAgcaccgGUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUg-----CAGGu -5'
16077 3' -61 NC_004065.1 + 115155 0.74 0.357541
Target:  5'- -aCCGCCAUCGUCGUCgggcGCCGCGcCCc -3'
miRNA:   3'- caGGCGGUAGCGGCGG----UGGUGCaGGu -5'
16077 3' -61 NC_004065.1 + 133274 0.8 0.150845
Target:  5'- cUCCGCCGUCGCCcugcucGCCcucgcCCGCGUCCAg -3'
miRNA:   3'- cAGGCGGUAGCGG------CGGu----GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 75873 0.79 0.191424
Target:  5'- -gCCGCCGcCGCCGCCGCCACcGcCCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUG-CaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.