miRNA display CGI


Results 21 - 40 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 205499 0.73 0.380366
Target:  5'- -gCCGUCGUCGCUGCCGCCGCcaUCUu -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGc-AGGu -5'
16077 3' -61 NC_004065.1 + 149877 0.74 0.357541
Target:  5'- -cCCGUCGUCaGCCGCCucuGCCGCG-CCAg -3'
miRNA:   3'- caGGCGGUAG-CGGCGG---UGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 195920 0.76 0.258208
Target:  5'- uUCUGCCGgcgcuuuaUCGCCGaUCACCugGUCCAg -3'
miRNA:   3'- cAGGCGGU--------AGCGGC-GGUGGugCAGGU- -5'
16077 3' -61 NC_004065.1 + 133274 0.8 0.150845
Target:  5'- cUCCGCCGUCGCCcugcucGCCcucgcCCGCGUCCAg -3'
miRNA:   3'- cAGGCGGUAGCGG------CGGu----GGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 184169 0.72 0.428841
Target:  5'- cUCCGUCGgaGCgGCCAUCGCGUCCc -3'
miRNA:   3'- cAGGCGGUagCGgCGGUGGUGCAGGu -5'
16077 3' -61 NC_004065.1 + 116257 0.73 0.404145
Target:  5'- aGUCgGUCGUCuGCCGCCGCgGCuGUCCc -3'
miRNA:   3'- -CAGgCGGUAG-CGGCGGUGgUG-CAGGu -5'
16077 3' -61 NC_004065.1 + 162885 0.74 0.349416
Target:  5'- cGUCCGCgAUCGCguccaggCGCgCGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGgUAGCG-------GCG-GUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 61466 0.8 0.147247
Target:  5'- -cCCGCUGUCGCCGCCGCCGCcgcugCCAc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 184488 0.73 0.396114
Target:  5'- -gCUGCCGcCGCCGCCGCgGCG-CCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGgUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 205175 0.81 0.140286
Target:  5'- -gCCGCCGUCGCCGCCaacaucgggcGCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCGGCGG----------UGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 115155 0.74 0.357541
Target:  5'- -aCCGCCAUCGUCGUCgggcGCCGCGcCCc -3'
miRNA:   3'- caGGCGGUAGCGGCGG----UGGUGCaGGu -5'
16077 3' -61 NC_004065.1 + 90395 0.73 0.380366
Target:  5'- -cCCGUCGUCGacaCGCCACCGC-UCCGc -3'
miRNA:   3'- caGGCGGUAGCg--GCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 161438 0.75 0.321679
Target:  5'- uGUCggCGCUcuggAUCGCCGCCGCCGCGUUg- -3'
miRNA:   3'- -CAG--GCGG----UAGCGGCGGUGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 95144 0.75 0.294976
Target:  5'- aGUCCGUagcgacaguucuCGUCGCCGCCGCCgugcaGgGUCCAg -3'
miRNA:   3'- -CAGGCG------------GUAGCGGCGGUGG-----UgCAGGU- -5'
16077 3' -61 NC_004065.1 + 162356 0.79 0.191424
Target:  5'- -cCCGCCGcCGCCGCCGCCGC-UCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcAGGu -5'
16077 3' -61 NC_004065.1 + 120902 0.79 0.182607
Target:  5'- -cCCGCCGUCcCCGCCACCucCGUCCc -3'
miRNA:   3'- caGGCGGUAGcGGCGGUGGu-GCAGGu -5'
16077 3' -61 NC_004065.1 + 173488 0.72 0.45354
Target:  5'- --gCGCCugcgguGUCGCCGCCACUcugaagaaaucucGCGUCCGu -3'
miRNA:   3'- cagGCGG------UAGCGGCGGUGG-------------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 198128 0.72 0.428841
Target:  5'- gGUCUGCgagcugguCAUCGCCGCCGCCAUGg--- -3'
miRNA:   3'- -CAGGCG--------GUAGCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 194409 0.73 0.412277
Target:  5'- -cCCGCCGcCGCCGCCGCCGUGgaUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGC--AGGu -5'
16077 3' -61 NC_004065.1 + 89253 0.73 0.412277
Target:  5'- cUCuCGUCAUCGUCGuccCCACCACGuUCCAg -3'
miRNA:   3'- cAG-GCGGUAGCGGC---GGUGGUGC-AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.