miRNA display CGI


Results 41 - 60 of 287 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 161266 0.72 0.428841
Target:  5'- -gCCGCCAgCaCCGCCGCgAUGUCCGa -3'
miRNA:   3'- caGGCGGUaGcGGCGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 162885 0.74 0.349416
Target:  5'- cGUCCGCgAUCGCguccaggCGCgCGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGgUAGCG-------GCG-GUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 61466 0.8 0.147247
Target:  5'- -cCCGCUGUCGCCGCCGCCGCcgcugCCAc -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGca---GGU- -5'
16077 3' -61 NC_004065.1 + 173313 0.73 0.42051
Target:  5'- -gCCGCCGcCGCCGCCGCUGCGg--- -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 205175 0.81 0.140286
Target:  5'- -gCCGCCGUCGCCGCCaacaucgggcGCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCGGCGG----------UGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 4647 0.7 0.573308
Target:  5'- --gCGCCAgCGCCcCCGCCgcggGCGUCCAg -3'
miRNA:   3'- cagGCGGUaGCGGcGGUGG----UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 120902 0.79 0.182607
Target:  5'- -cCCGCCGUCcCCGCCACCucCGUCCc -3'
miRNA:   3'- caGGCGGUAGcGGCGGUGGu-GCAGGu -5'
16077 3' -61 NC_004065.1 + 203406 0.7 0.563807
Target:  5'- -cCCGCUGUCGCCGCacuCCGacucUGUCCGc -3'
miRNA:   3'- caGGCGGUAGCGGCGgu-GGU----GCAGGU- -5'
16077 3' -61 NC_004065.1 + 29239 0.7 0.554349
Target:  5'- --aCGCCGUCGcCCGCCACCGCc---- -3'
miRNA:   3'- cagGCGGUAGC-GGCGGUGGUGcaggu -5'
16077 3' -61 NC_004065.1 + 77361 0.71 0.526278
Target:  5'- cUCgCGCCGUCGCCGCCGuuGgcUCCGa -3'
miRNA:   3'- cAG-GCGGUAGCGGCGGUggUgcAGGU- -5'
16077 3' -61 NC_004065.1 + 207115 0.71 0.507864
Target:  5'- -aCCGCCGacCGCCGCCacugACCGCGUUgGg -3'
miRNA:   3'- caGGCGGUa-GCGGCGG----UGGUGCAGgU- -5'
16077 3' -61 NC_004065.1 + 173488 0.72 0.45354
Target:  5'- --gCGCCugcgguGUCGCCGCCACUcugaagaaaucucGCGUCCGu -3'
miRNA:   3'- cagGCGG------UAGCGGCGGUGG-------------UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 198128 0.72 0.428841
Target:  5'- gGUCUGCgagcugguCAUCGCCGCCGCCAUGg--- -3'
miRNA:   3'- -CAGGCG--------GUAGCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 91482 0.73 0.412277
Target:  5'- aGUCCGCC---GCCGCUcguGCCGCGUUCGa -3'
miRNA:   3'- -CAGGCGGuagCGGCGG---UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 184488 0.73 0.396114
Target:  5'- -gCUGCCGcCGCCGCCGCgGCG-CCGg -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGgUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 205499 0.73 0.380366
Target:  5'- -gCCGUCGUCGCUGCCGCCGCcaUCUu -3'
miRNA:   3'- caGGCGGUAGCGGCGGUGGUGc-AGGu -5'
16077 3' -61 NC_004065.1 + 149877 0.74 0.357541
Target:  5'- -cCCGUCGUCaGCCGCCucuGCCGCG-CCAg -3'
miRNA:   3'- caGGCGGUAG-CGGCGG---UGGUGCaGGU- -5'
16077 3' -61 NC_004065.1 + 161438 0.75 0.321679
Target:  5'- uGUCggCGCUcuggAUCGCCGCCGCCGCGUUg- -3'
miRNA:   3'- -CAG--GCGG----UAGCGGCGGUGGUGCAGgu -5'
16077 3' -61 NC_004065.1 + 95144 0.75 0.294976
Target:  5'- aGUCCGUagcgacaguucuCGUCGCCGCCGCCgugcaGgGUCCAg -3'
miRNA:   3'- -CAGGCG------------GUAGCGGCGGUGG-----UgCAGGU- -5'
16077 3' -61 NC_004065.1 + 162356 0.79 0.191424
Target:  5'- -cCCGCCGcCGCCGCCGCCGC-UCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUGcAGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.