miRNA display CGI


Results 61 - 80 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16077 3' -61 NC_004065.1 + 198128 0.72 0.428841
Target:  5'- gGUCUGCgagcugguCAUCGCCGCCGCCAUGg--- -3'
miRNA:   3'- -CAGGCG--------GUAGCGGCGGUGGUGCaggu -5'
16077 3' -61 NC_004065.1 + 78909 0.72 0.463109
Target:  5'- -gCCGCCuUCGCUGCUGCCGuCGUCg- -3'
miRNA:   3'- caGGCGGuAGCGGCGGUGGU-GCAGgu -5'
16077 3' -61 NC_004065.1 + 161861 0.79 0.191424
Target:  5'- cUCCGUCGcgcgCGCCGCCgcgaucACCGCGUCCAg -3'
miRNA:   3'- cAGGCGGUa---GCGGCGG------UGGUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 81385 0.78 0.220143
Target:  5'- uGUUCGCCAUCgaGUCGCUGCCGCuGUCCAg -3'
miRNA:   3'- -CAGGCGGUAG--CGGCGGUGGUG-CAGGU- -5'
16077 3' -61 NC_004065.1 + 167641 0.75 0.301486
Target:  5'- -gCCGCCAccccCGCCGCCACCACcccgCCGc -3'
miRNA:   3'- caGGCGGUa---GCGGCGGUGGUGca--GGU- -5'
16077 3' -61 NC_004065.1 + 200055 0.75 0.328631
Target:  5'- -gCCGCCGcCGCCGCCGCCAgcaccgGUCCc -3'
miRNA:   3'- caGGCGGUaGCGGCGGUGGUg-----CAGGu -5'
16077 3' -61 NC_004065.1 + 160854 0.74 0.365041
Target:  5'- cUCCGUCGccuUCGCCuCCGCCuCGUCCAg -3'
miRNA:   3'- cAGGCGGU---AGCGGcGGUGGuGCAGGU- -5'
16077 3' -61 NC_004065.1 + 90395 0.73 0.380366
Target:  5'- -cCCGUCGUCGacaCGCCACCGC-UCCGc -3'
miRNA:   3'- caGGCGGUAGCg--GCGGUGGUGcAGGU- -5'
16077 3' -61 NC_004065.1 + 116257 0.73 0.404145
Target:  5'- aGUCgGUCGUCuGCCGCCGCgGCuGUCCc -3'
miRNA:   3'- -CAGgCGGUAG-CGGCGGUGgUG-CAGGu -5'
16077 3' -61 NC_004065.1 + 27412 0.73 0.412277
Target:  5'- uGUCCGgCGUaUGCCGUCACgAUGUCCGc -3'
miRNA:   3'- -CAGGCgGUA-GCGGCGGUGgUGCAGGU- -5'
16077 3' -61 NC_004065.1 + 133744 0.68 0.678939
Target:  5'- cGUCCGUgAcgccccUgGCCGCC-CCGcCGUCCAu -3'
miRNA:   3'- -CAGGCGgU------AgCGGCGGuGGU-GCAGGU- -5'
16077 3' -61 NC_004065.1 + 110572 0.68 0.65977
Target:  5'- gGUCCGCCAggcgucggucUCGgCGaCCACCACG-CgCAc -3'
miRNA:   3'- -CAGGCGGU----------AGCgGC-GGUGGUGCaG-GU- -5'
16077 3' -61 NC_004065.1 + 96007 0.71 0.517038
Target:  5'- -gCCGCCAUCGCacuucccacuacCGCCcCCGCGUgCGu -3'
miRNA:   3'- caGGCGGUAGCG------------GCGGuGGUGCAgGU- -5'
16077 3' -61 NC_004065.1 + 153285 0.7 0.544939
Target:  5'- -gCCGCCggCGCCG-CGCC-CGUCCc -3'
miRNA:   3'- caGGCGGuaGCGGCgGUGGuGCAGGu -5'
16077 3' -61 NC_004065.1 + 203406 0.7 0.563807
Target:  5'- -cCCGCUGUCGCCGCacuCCGacucUGUCCGc -3'
miRNA:   3'- caGGCGGUAGCGGCGgu-GGU----GCAGGU- -5'
16077 3' -61 NC_004065.1 + 4647 0.7 0.573308
Target:  5'- --gCGCCAgCGCCcCCGCCgcggGCGUCCAg -3'
miRNA:   3'- cagGCGGUaGCGGcGGUGG----UGCAGGU- -5'
16077 3' -61 NC_004065.1 + 153245 0.7 0.592414
Target:  5'- cGUUCGCCGUCGCgGCgGCgAUGcgCCGg -3'
miRNA:   3'- -CAGGCGGUAGCGgCGgUGgUGCa-GGU- -5'
16077 3' -61 NC_004065.1 + 171877 0.69 0.602008
Target:  5'- cUCCGCCGgcgacgauuUCGCCGCCugCGuCGaUCAa -3'
miRNA:   3'- cAGGCGGU---------AGCGGCGGugGU-GCaGGU- -5'
16077 3' -61 NC_004065.1 + 174912 0.69 0.640522
Target:  5'- -aCUGUC-UCGgCGCCGCCGCGggcgCCAg -3'
miRNA:   3'- caGGCGGuAGCgGCGGUGGUGCa---GGU- -5'
16077 3' -61 NC_004065.1 + 159190 0.68 0.656887
Target:  5'- gGUCCGCgucuuucuucucuuCgAUCGCCGCCAggaugaauuCCGuCGUCCAc -3'
miRNA:   3'- -CAGGCG--------------G-UAGCGGCGGU---------GGU-GCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.