miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16078 5' -54.4 NC_004065.1 + 67587 0.65 0.978378
Target:  5'- cGCAGggGCcucgGCucgagauAGCGCGGcgUCCGUCg -3'
miRNA:   3'- -UGUCgaCGa---CG-------UCGUGCUuaAGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 101428 0.66 0.976238
Target:  5'- gGCGGCUG--GCGcGUGCGGAUgcgccuucgCCGCCg -3'
miRNA:   3'- -UGUCGACgaCGU-CGUGCUUAa--------GGCGG- -5'
16078 5' -54.4 NC_004065.1 + 28868 0.66 0.976238
Target:  5'- gGC-GCUGCUGCGugACGAGgaCUGCUg -3'
miRNA:   3'- -UGuCGACGACGUcgUGCUUaaGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 55481 0.66 0.976238
Target:  5'- aGCAGUUGCUGUuGCG-GAAUcgcaugaCGCCg -3'
miRNA:   3'- -UGUCGACGACGuCGUgCUUAag-----GCGG- -5'
16078 5' -54.4 NC_004065.1 + 45538 0.66 0.976238
Target:  5'- cCGGCgccGCgGCGGCGgCGGcagCCGCCc -3'
miRNA:   3'- uGUCGa--CGaCGUCGU-GCUuaaGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 133030 0.66 0.976238
Target:  5'- gGCAGCagacgucGCaGCAGCGCGAcggaCgGCCg -3'
miRNA:   3'- -UGUCGa------CGaCGUCGUGCUuaa-GgCGG- -5'
16078 5' -54.4 NC_004065.1 + 186385 0.66 0.976238
Target:  5'- gACGGCggagGCUGCGuuggugguucguGuCugGAAccgCCGCCg -3'
miRNA:   3'- -UGUCGa---CGACGU------------C-GugCUUaa-GGCGG- -5'
16078 5' -54.4 NC_004065.1 + 163345 0.66 0.973682
Target:  5'- gGCAGCuUGCUGCAagucauccuGguCGAAcacUCGCCg -3'
miRNA:   3'- -UGUCG-ACGACGU---------CguGCUUaa-GGCGG- -5'
16078 5' -54.4 NC_004065.1 + 174338 0.66 0.973682
Target:  5'- gACAGCuucgacuacgagUGCUGgaAGCACGAGacCgGCCa -3'
miRNA:   3'- -UGUCG------------ACGACg-UCGUGCUUaaGgCGG- -5'
16078 5' -54.4 NC_004065.1 + 72669 0.66 0.973682
Target:  5'- cCGGCUGaucgUGCGGCACcuGGAgaacCUGCCg -3'
miRNA:   3'- uGUCGACg---ACGUCGUG--CUUaa--GGCGG- -5'
16078 5' -54.4 NC_004065.1 + 182845 0.66 0.973682
Target:  5'- gACAGCUGgUcuggggugaGguGCGCccGUUUCGCCa -3'
miRNA:   3'- -UGUCGACgA---------CguCGUGcuUAAGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 163648 0.66 0.973682
Target:  5'- gGCGGCgGCaGCGGCAgCGGAggcacagCgGCCu -3'
miRNA:   3'- -UGUCGaCGaCGUCGU-GCUUaa-----GgCGG- -5'
16078 5' -54.4 NC_004065.1 + 34107 0.66 0.973682
Target:  5'- uCGGCgauaaaGCgccgGCAGaACGAGU-CCGCCg -3'
miRNA:   3'- uGUCGa-----CGa---CGUCgUGCUUAaGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 135741 0.66 0.973682
Target:  5'- aGCuGUUGCUGCuuucGCGCGA----CGCCu -3'
miRNA:   3'- -UGuCGACGACGu---CGUGCUuaagGCGG- -5'
16078 5' -54.4 NC_004065.1 + 119834 0.66 0.970932
Target:  5'- gACGG--GCgGCGGCGCGucgcggCCGCCg -3'
miRNA:   3'- -UGUCgaCGaCGUCGUGCuuaa--GGCGG- -5'
16078 5' -54.4 NC_004065.1 + 101908 0.66 0.970932
Target:  5'- -gAGCUGCUGgAGgAgGAugcucgAUUUCGCCc -3'
miRNA:   3'- ugUCGACGACgUCgUgCU------UAAGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 152925 0.66 0.970932
Target:  5'- cACAG--GUUGCAGCGCGAGUcgaucUCCaGCg -3'
miRNA:   3'- -UGUCgaCGACGUCGUGCUUA-----AGG-CGg -5'
16078 5' -54.4 NC_004065.1 + 751 0.66 0.967983
Target:  5'- cCAGCgUGCcGCGuCGCGggUUCgCGCUc -3'
miRNA:   3'- uGUCG-ACGaCGUcGUGCuuAAG-GCGG- -5'
16078 5' -54.4 NC_004065.1 + 201682 0.66 0.967983
Target:  5'- -aGGCUGCgGCGGCacaacGCGGAcaggcccugUCCGUCu -3'
miRNA:   3'- ugUCGACGaCGUCG-----UGCUUa--------AGGCGG- -5'
16078 5' -54.4 NC_004065.1 + 89317 0.66 0.967983
Target:  5'- gGCAGCgaguuCUGCAGgACGcg--CUGCCa -3'
miRNA:   3'- -UGUCGac---GACGUCgUGCuuaaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.