miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 3' -54.2 NC_001347.2 + 173672 0.66 0.986764
Target:  5'- -cGGugGCGGca-AGAAGcACGaCCGCg -3'
miRNA:   3'- caCUugCGCCcagUCUUCaUGC-GGCG- -5'
1608 3' -54.2 NC_001347.2 + 1800 0.66 0.981407
Target:  5'- cUGGGCGCGuGG-CAGGAGcugGCGCaGUa -3'
miRNA:   3'- cACUUGCGC-CCaGUCUUCa--UGCGgCG- -5'
1608 3' -54.2 NC_001347.2 + 22884 0.66 0.981407
Target:  5'- -cGGccACGUcuGGGUgCAGcAGUACGCCGa -3'
miRNA:   3'- caCU--UGCG--CCCA-GUCuUCAUGCGGCg -5'
1608 3' -54.2 NC_001347.2 + 169918 0.66 0.977026
Target:  5'- -gGAAuCGUcGG-CAGAGGU-CGCCGCu -3'
miRNA:   3'- caCUU-GCGcCCaGUCUUCAuGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 92367 0.66 0.977026
Target:  5'- -gGGACGCGGcagcaacCAGgcGccgGCGCCGCc -3'
miRNA:   3'- caCUUGCGCCca-----GUCuuCa--UGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 53744 0.66 0.977026
Target:  5'- cGUGc-CGCGGGUgcgcgCAGAAGaAUGuuGCg -3'
miRNA:   3'- -CACuuGCGCCCA-----GUCUUCaUGCggCG- -5'
1608 3' -54.2 NC_001347.2 + 40674 0.67 0.974314
Target:  5'- -gGGACGgGGGUUgcgcuggggccggGGcuGUucGCGCCGCg -3'
miRNA:   3'- caCUUGCgCCCAG-------------UCuuCA--UGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 143738 0.67 0.969096
Target:  5'- -cGGugGCGcGUCAGGAaguGUACGUCGa -3'
miRNA:   3'- caCUugCGCcCAGUCUU---CAUGCGGCg -5'
1608 3' -54.2 NC_001347.2 + 174788 0.67 0.969096
Target:  5'- --cGACGUGGGUCGcGAGuucauGUugGCgCGCg -3'
miRNA:   3'- cacUUGCGCCCAGU-CUU-----CAugCG-GCG- -5'
1608 3' -54.2 NC_001347.2 + 2163 0.67 0.969096
Target:  5'- -cGGACGCGGcagCAGcAGcgGCGCCGa -3'
miRNA:   3'- caCUUGCGCCca-GUCuUCa-UGCGGCg -5'
1608 3' -54.2 NC_001347.2 + 154605 0.67 0.962829
Target:  5'- -aGAACGUGGuGUCGGAacaGGU-CGUCGa -3'
miRNA:   3'- caCUUGCGCC-CAGUCU---UCAuGCGGCg -5'
1608 3' -54.2 NC_001347.2 + 229133 0.68 0.955729
Target:  5'- gGUGAG-GUGGGUUcccuGGUccGCGCCGCa -3'
miRNA:   3'- -CACUUgCGCCCAGucu-UCA--UGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 108149 0.68 0.955729
Target:  5'- aUGuAAgGCGGcGgccgCAGAGGgcGCGCCGCu -3'
miRNA:   3'- cAC-UUgCGCC-Ca---GUCUUCa-UGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 2211 0.68 0.955729
Target:  5'- -cGAugGCGGGUCcggcggcgucgGGGAccgUGCCGCg -3'
miRNA:   3'- caCUugCGCCCAG-----------UCUUcauGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 198975 0.68 0.951854
Target:  5'- gGUGAGcCGCGGcGauUCGGgcGUGCcgcgauGCCGCa -3'
miRNA:   3'- -CACUU-GCGCC-C--AGUCuuCAUG------CGGCG- -5'
1608 3' -54.2 NC_001347.2 + 87903 0.68 0.951854
Target:  5'- -aGAacauACGCGGGUCGcacGUAagGCCGCg -3'
miRNA:   3'- caCU----UGCGCCCAGUcuuCAUg-CGGCG- -5'
1608 3' -54.2 NC_001347.2 + 46750 0.68 0.949423
Target:  5'- -----gGCGGGUCAGAGGUAgucagaucaugagacUGUCGUg -3'
miRNA:   3'- cacuugCGCCCAGUCUUCAU---------------GCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 170063 0.68 0.947759
Target:  5'- aGUGGugGCGGcgucGUCAGuuggcgucccGAGU-CGCCGUc -3'
miRNA:   3'- -CACUugCGCC----CAGUC----------UUCAuGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 135814 0.68 0.947759
Target:  5'- gGUGGAC-CGGGaagccggCGGAGGU-CGCCGg -3'
miRNA:   3'- -CACUUGcGCCCa------GUCUUCAuGCGGCg -5'
1608 3' -54.2 NC_001347.2 + 182202 0.69 0.938893
Target:  5'- -gGggUGCGGGUgGcGGGcUGCGUCGCc -3'
miRNA:   3'- caCuuGCGCCCAgUcUUC-AUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.