Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1608 | 3' | -54.2 | NC_001347.2 | + | 176408 | 0.69 | 0.923883 |
Target: 5'- cGUGuuccaGGGUUGGgcGUACGCCGUg -3' miRNA: 3'- -CACuugcgCCCAGUCuuCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 182202 | 0.69 | 0.938893 |
Target: 5'- -gGggUGCGGGUgGcGGGcUGCGUCGCc -3' miRNA: 3'- caCuuGCGCCCAgUcUUC-AUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 143009 | 0.7 | 0.906808 |
Target: 5'- -cGGugGUGGa--GGAGGuUGCGCCGCa -3' miRNA: 3'- caCUugCGCCcagUCUUC-AUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 193016 | 0.7 | 0.900662 |
Target: 5'- gGUGGA-GCGGGUCGccGAGGcUACuGCUGCu -3' miRNA: 3'- -CACUUgCGCCCAGU--CUUC-AUG-CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 89181 | 0.71 | 0.85922 |
Target: 5'- gGUGAGCcgguGCuGcGGUCcGuAGGUACGCCGCa -3' miRNA: 3'- -CACUUG----CG-C-CCAGuC-UUCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 21998 | 0.71 | 0.851592 |
Target: 5'- --uGACGaCGGGUCGGAuacAGggUGCCGCc -3' miRNA: 3'- cacUUGC-GCCCAGUCU---UCauGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 140854 | 0.71 | 0.871731 |
Target: 5'- uGUGGACGaCGaGGcccuggguuucguuUCGGAGGUGCGCCu- -3' miRNA: 3'- -CACUUGC-GC-CC--------------AGUCUUCAUGCGGcg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 229687 | 0.72 | 0.827589 |
Target: 5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3' miRNA: 3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 208 | 0.72 | 0.827589 |
Target: 5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3' miRNA: 3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 63084 | 0.73 | 0.756637 |
Target: 5'- -cGggUGUGGGcUCGGcAAGUGcCGCCGUg -3' miRNA: 3'- caCuuGCGCCC-AGUC-UUCAU-GCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 153741 | 0.74 | 0.71738 |
Target: 5'- -aGGACGUggcaaaauaccGGGUCGGGucgcgccAGUGCGCCGUc -3' miRNA: 3'- caCUUGCG-----------CCCAGUCU-------UCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 85535 | 0.74 | 0.718353 |
Target: 5'- uUGAGCGUGGccCuGAAGaGCGCCGCg -3' miRNA: 3'- cACUUGCGCCcaGuCUUCaUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 155740 | 1.11 | 0.00511 |
Target: 5'- cGUGAACGCGGGUCAGAAGUACGCCGCc -3' miRNA: 3'- -CACUUGCGCCCAGUCUUCAUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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