Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1608 | 3' | -54.2 | NC_001347.2 | + | 155740 | 1.11 | 0.00511 |
Target: 5'- cGUGAACGCGGGUCAGAAGUACGCCGCc -3' miRNA: 3'- -CACUUGCGCCCAGUCUUCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 153741 | 0.74 | 0.71738 |
Target: 5'- -aGGACGUggcaaaauaccGGGUCGGGucgcgccAGUGCGCCGUc -3' miRNA: 3'- caCUUGCG-----------CCCAGUCU-------UCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 85535 | 0.74 | 0.718353 |
Target: 5'- uUGAGCGUGGccCuGAAGaGCGCCGCg -3' miRNA: 3'- cACUUGCGCCcaGuCUUCaUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 63084 | 0.73 | 0.756637 |
Target: 5'- -cGggUGUGGGcUCGGcAAGUGcCGCCGUg -3' miRNA: 3'- caCuuGCGCCC-AGUC-UUCAU-GCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 229687 | 0.72 | 0.827589 |
Target: 5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3' miRNA: 3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 208 | 0.72 | 0.827589 |
Target: 5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3' miRNA: 3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 21998 | 0.71 | 0.851592 |
Target: 5'- --uGACGaCGGGUCGGAuacAGggUGCCGCc -3' miRNA: 3'- cacUUGC-GCCCAGUCU---UCauGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 89181 | 0.71 | 0.85922 |
Target: 5'- gGUGAGCcgguGCuGcGGUCcGuAGGUACGCCGCa -3' miRNA: 3'- -CACUUG----CG-C-CCAGuC-UUCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 140854 | 0.71 | 0.871731 |
Target: 5'- uGUGGACGaCGaGGcccuggguuucguuUCGGAGGUGCGCCu- -3' miRNA: 3'- -CACUUGC-GC-CC--------------AGUCUUCAUGCGGcg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 193016 | 0.7 | 0.900662 |
Target: 5'- gGUGGA-GCGGGUCGccGAGGcUACuGCUGCu -3' miRNA: 3'- -CACUUgCGCCCAGU--CUUC-AUG-CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 143009 | 0.7 | 0.906808 |
Target: 5'- -cGGugGUGGa--GGAGGuUGCGCCGCa -3' miRNA: 3'- caCUugCGCCcagUCUUC-AUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 176408 | 0.69 | 0.923883 |
Target: 5'- cGUGuuccaGGGUUGGgcGUACGCCGUg -3' miRNA: 3'- -CACuugcgCCCAGUCuuCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 149921 | 0.69 | 0.93412 |
Target: 5'- ----cCGUGGGUuuuaagCGGcAGUACGCCGCc -3' miRNA: 3'- cacuuGCGCCCA------GUCuUCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 182202 | 0.69 | 0.938893 |
Target: 5'- -gGggUGCGGGUgGcGGGcUGCGUCGCc -3' miRNA: 3'- caCuuGCGCCCAgUcUUC-AUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 170063 | 0.68 | 0.947759 |
Target: 5'- aGUGGugGCGGcgucGUCAGuuggcgucccGAGU-CGCCGUc -3' miRNA: 3'- -CACUugCGCC----CAGUC----------UUCAuGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 135814 | 0.68 | 0.947759 |
Target: 5'- gGUGGAC-CGGGaagccggCGGAGGU-CGCCGg -3' miRNA: 3'- -CACUUGcGCCCa------GUCUUCAuGCGGCg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 46750 | 0.68 | 0.949423 |
Target: 5'- -----gGCGGGUCAGAGGUAgucagaucaugagacUGUCGUg -3' miRNA: 3'- cacuugCGCCCAGUCUUCAU---------------GCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 198975 | 0.68 | 0.951854 |
Target: 5'- gGUGAGcCGCGGcGauUCGGgcGUGCcgcgauGCCGCa -3' miRNA: 3'- -CACUU-GCGCC-C--AGUCuuCAUG------CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 87903 | 0.68 | 0.951854 |
Target: 5'- -aGAacauACGCGGGUCGcacGUAagGCCGCg -3' miRNA: 3'- caCU----UGCGCCCAGUcuuCAUg-CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 108149 | 0.68 | 0.955729 |
Target: 5'- aUGuAAgGCGGcGgccgCAGAGGgcGCGCCGCu -3' miRNA: 3'- cAC-UUgCGCC-Ca---GUCUUCa-UGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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