miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 3' -54.2 NC_001347.2 + 149921 0.69 0.93412
Target:  5'- ----cCGUGGGUuuuaagCGGcAGUACGCCGCc -3'
miRNA:   3'- cacuuGCGCCCA------GUCuUCAUGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 176408 0.69 0.923883
Target:  5'- cGUGuuccaGGGUUGGgcGUACGCCGUg -3'
miRNA:   3'- -CACuugcgCCCAGUCuuCAUGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 143009 0.7 0.906808
Target:  5'- -cGGugGUGGa--GGAGGuUGCGCCGCa -3'
miRNA:   3'- caCUugCGCCcagUCUUC-AUGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 193016 0.7 0.900662
Target:  5'- gGUGGA-GCGGGUCGccGAGGcUACuGCUGCu -3'
miRNA:   3'- -CACUUgCGCCCAGU--CUUC-AUG-CGGCG- -5'
1608 3' -54.2 NC_001347.2 + 140854 0.71 0.871731
Target:  5'- uGUGGACGaCGaGGcccuggguuucguuUCGGAGGUGCGCCu- -3'
miRNA:   3'- -CACUUGC-GC-CC--------------AGUCUUCAUGCGGcg -5'
1608 3' -54.2 NC_001347.2 + 89181 0.71 0.85922
Target:  5'- gGUGAGCcgguGCuGcGGUCcGuAGGUACGCCGCa -3'
miRNA:   3'- -CACUUG----CG-C-CCAGuC-UUCAUGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 21998 0.71 0.851592
Target:  5'- --uGACGaCGGGUCGGAuacAGggUGCCGCc -3'
miRNA:   3'- cacUUGC-GCCCAGUCU---UCauGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 229687 0.72 0.827589
Target:  5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3'
miRNA:   3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5'
1608 3' -54.2 NC_001347.2 + 208 0.72 0.827589
Target:  5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3'
miRNA:   3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5'
1608 3' -54.2 NC_001347.2 + 63084 0.73 0.756637
Target:  5'- -cGggUGUGGGcUCGGcAAGUGcCGCCGUg -3'
miRNA:   3'- caCuuGCGCCC-AGUC-UUCAU-GCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 85535 0.74 0.718353
Target:  5'- uUGAGCGUGGccCuGAAGaGCGCCGCg -3'
miRNA:   3'- cACUUGCGCCcaGuCUUCaUGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 153741 0.74 0.71738
Target:  5'- -aGGACGUggcaaaauaccGGGUCGGGucgcgccAGUGCGCCGUc -3'
miRNA:   3'- caCUUGCG-----------CCCAGUCU-------UCAUGCGGCG- -5'
1608 3' -54.2 NC_001347.2 + 155740 1.11 0.00511
Target:  5'- cGUGAACGCGGGUCAGAAGUACGCCGCc -3'
miRNA:   3'- -CACUUGCGCCCAGUCUUCAUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.