Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1608 | 3' | -54.2 | NC_001347.2 | + | 208 | 0.72 | 0.827589 |
Target: 5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3' miRNA: 3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 1800 | 0.66 | 0.981407 |
Target: 5'- cUGGGCGCGuGG-CAGGAGcugGCGCaGUa -3' miRNA: 3'- cACUUGCGC-CCaGUCUUCa--UGCGgCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 2163 | 0.67 | 0.969096 |
Target: 5'- -cGGACGCGGcagCAGcAGcgGCGCCGa -3' miRNA: 3'- caCUUGCGCCca-GUCuUCa-UGCGGCg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 2211 | 0.68 | 0.955729 |
Target: 5'- -cGAugGCGGGUCcggcggcgucgGGGAccgUGCCGCg -3' miRNA: 3'- caCUugCGCCCAG-----------UCUUcauGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 21998 | 0.71 | 0.851592 |
Target: 5'- --uGACGaCGGGUCGGAuacAGggUGCCGCc -3' miRNA: 3'- cacUUGC-GCCCAGUCU---UCauGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 22884 | 0.66 | 0.981407 |
Target: 5'- -cGGccACGUcuGGGUgCAGcAGUACGCCGa -3' miRNA: 3'- caCU--UGCG--CCCA-GUCuUCAUGCGGCg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 40674 | 0.67 | 0.974314 |
Target: 5'- -gGGACGgGGGUUgcgcuggggccggGGcuGUucGCGCCGCg -3' miRNA: 3'- caCUUGCgCCCAG-------------UCuuCA--UGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 46750 | 0.68 | 0.949423 |
Target: 5'- -----gGCGGGUCAGAGGUAgucagaucaugagacUGUCGUg -3' miRNA: 3'- cacuugCGCCCAGUCUUCAU---------------GCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 53744 | 0.66 | 0.977026 |
Target: 5'- cGUGc-CGCGGGUgcgcgCAGAAGaAUGuuGCg -3' miRNA: 3'- -CACuuGCGCCCA-----GUCUUCaUGCggCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 63084 | 0.73 | 0.756637 |
Target: 5'- -cGggUGUGGGcUCGGcAAGUGcCGCCGUg -3' miRNA: 3'- caCuuGCGCCC-AGUC-UUCAU-GCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 85535 | 0.74 | 0.718353 |
Target: 5'- uUGAGCGUGGccCuGAAGaGCGCCGCg -3' miRNA: 3'- cACUUGCGCCcaGuCUUCaUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 87903 | 0.68 | 0.951854 |
Target: 5'- -aGAacauACGCGGGUCGcacGUAagGCCGCg -3' miRNA: 3'- caCU----UGCGCCCAGUcuuCAUg-CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 89181 | 0.71 | 0.85922 |
Target: 5'- gGUGAGCcgguGCuGcGGUCcGuAGGUACGCCGCa -3' miRNA: 3'- -CACUUG----CG-C-CCAGuC-UUCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 92367 | 0.66 | 0.977026 |
Target: 5'- -gGGACGCGGcagcaacCAGgcGccgGCGCCGCc -3' miRNA: 3'- caCUUGCGCCca-----GUCuuCa--UGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 108149 | 0.68 | 0.955729 |
Target: 5'- aUGuAAgGCGGcGgccgCAGAGGgcGCGCCGCu -3' miRNA: 3'- cAC-UUgCGCC-Ca---GUCUUCa-UGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 135814 | 0.68 | 0.947759 |
Target: 5'- gGUGGAC-CGGGaagccggCGGAGGU-CGCCGg -3' miRNA: 3'- -CACUUGcGCCCa------GUCUUCAuGCGGCg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 140854 | 0.71 | 0.871731 |
Target: 5'- uGUGGACGaCGaGGcccuggguuucguuUCGGAGGUGCGCCu- -3' miRNA: 3'- -CACUUGC-GC-CC--------------AGUCUUCAUGCGGcg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 143009 | 0.7 | 0.906808 |
Target: 5'- -cGGugGUGGa--GGAGGuUGCGCCGCa -3' miRNA: 3'- caCUugCGCCcagUCUUC-AUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 143738 | 0.67 | 0.969096 |
Target: 5'- -cGGugGCGcGUCAGGAaguGUACGUCGa -3' miRNA: 3'- caCUugCGCcCAGUCUU---CAUGCGGCg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 149921 | 0.69 | 0.93412 |
Target: 5'- ----cCGUGGGUuuuaagCGGcAGUACGCCGCc -3' miRNA: 3'- cacuuGCGCCCA------GUCuUCAUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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