Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1608 | 3' | -54.2 | NC_001347.2 | + | 153741 | 0.74 | 0.71738 |
Target: 5'- -aGGACGUggcaaaauaccGGGUCGGGucgcgccAGUGCGCCGUc -3' miRNA: 3'- caCUUGCG-----------CCCAGUCU-------UCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 154605 | 0.67 | 0.962829 |
Target: 5'- -aGAACGUGGuGUCGGAacaGGU-CGUCGa -3' miRNA: 3'- caCUUGCGCC-CAGUCU---UCAuGCGGCg -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 155740 | 1.11 | 0.00511 |
Target: 5'- cGUGAACGCGGGUCAGAAGUACGCCGCc -3' miRNA: 3'- -CACUUGCGCCCAGUCUUCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 169918 | 0.66 | 0.977026 |
Target: 5'- -gGAAuCGUcGG-CAGAGGU-CGCCGCu -3' miRNA: 3'- caCUU-GCGcCCaGUCUUCAuGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 170063 | 0.68 | 0.947759 |
Target: 5'- aGUGGugGCGGcgucGUCAGuuggcgucccGAGU-CGCCGUc -3' miRNA: 3'- -CACUugCGCC----CAGUC----------UUCAuGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 173672 | 0.66 | 0.986764 |
Target: 5'- -cGGugGCGGca-AGAAGcACGaCCGCg -3' miRNA: 3'- caCUugCGCCcagUCUUCaUGC-GGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 174788 | 0.67 | 0.969096 |
Target: 5'- --cGACGUGGGUCGcGAGuucauGUugGCgCGCg -3' miRNA: 3'- cacUUGCGCCCAGU-CUU-----CAugCG-GCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 176408 | 0.69 | 0.923883 |
Target: 5'- cGUGuuccaGGGUUGGgcGUACGCCGUg -3' miRNA: 3'- -CACuugcgCCCAGUCuuCAUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 182202 | 0.69 | 0.938893 |
Target: 5'- -gGggUGCGGGUgGcGGGcUGCGUCGCc -3' miRNA: 3'- caCuuGCGCCCAgUcUUC-AUGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 193016 | 0.7 | 0.900662 |
Target: 5'- gGUGGA-GCGGGUCGccGAGGcUACuGCUGCu -3' miRNA: 3'- -CACUUgCGCCCAGU--CUUC-AUG-CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 198975 | 0.68 | 0.951854 |
Target: 5'- gGUGAGcCGCGGcGauUCGGgcGUGCcgcgauGCCGCa -3' miRNA: 3'- -CACUU-GCGCC-C--AGUCuuCAUG------CGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 229133 | 0.68 | 0.955729 |
Target: 5'- gGUGAG-GUGGGUUcccuGGUccGCGCCGCa -3' miRNA: 3'- -CACUUgCGCCCAGucu-UCA--UGCGGCG- -5' |
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1608 | 3' | -54.2 | NC_001347.2 | + | 229687 | 0.72 | 0.827589 |
Target: 5'- uGUGGugGCGGGgugugUCGGcgguGUGCGCgGCc -3' miRNA: 3'- -CACUugCGCCC-----AGUCuu--CAUGCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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