miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 5' -58.7 NC_001347.2 + 116772 0.66 0.885689
Target:  5'- -aGCuGCGACaGCGUGACCgcGgGGUCg -3'
miRNA:   3'- cgUGcCGCUGaCGCGCUGGa-CgUCAG- -5'
1608 5' -58.7 NC_001347.2 + 229534 0.66 0.885689
Target:  5'- gGCGCGGCGGgUGgGUGugUgccgGguGUg -3'
miRNA:   3'- -CGUGCCGCUgACgCGCugGa---CguCAg -5'
1608 5' -58.7 NC_001347.2 + 97931 0.66 0.885689
Target:  5'- aCACGGCGAaucaGuUGCGACa-GCGGUCc -3'
miRNA:   3'- cGUGCCGCUga--C-GCGCUGgaCGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 174783 0.66 0.885028
Target:  5'- -gGCGGCGACgugggucgcgaguUcauguuggcGCGCGACCUGCuGg- -3'
miRNA:   3'- cgUGCCGCUG-------------A---------CGCGCUGGACGuCag -5'
1608 5' -58.7 NC_001347.2 + 13953 0.66 0.878979
Target:  5'- cGCGgGGUGGCgaaGCGgGAgcgcugauguaCCUGCAGcUCg -3'
miRNA:   3'- -CGUgCCGCUGa--CGCgCU-----------GGACGUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 81634 0.66 0.878979
Target:  5'- cGCACGGCGccGCcGC-CGGCCU-CGGUa -3'
miRNA:   3'- -CGUGCCGC--UGaCGcGCUGGAcGUCAg -5'
1608 5' -58.7 NC_001347.2 + 210404 0.66 0.872068
Target:  5'- aUACGGCGugauGCUGUGaUGACg-GCGGUCu -3'
miRNA:   3'- cGUGCCGC----UGACGC-GCUGgaCGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 84377 0.66 0.872068
Target:  5'- gGCGCGGaguccuGGgUGUGUcgGGCCgcgGCAGUCg -3'
miRNA:   3'- -CGUGCCg-----CUgACGCG--CUGGa--CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 158102 0.66 0.857657
Target:  5'- uGCGCGGCGGCcucaucggcaGCGUcaucGACCUGCcgcucugguGUCu -3'
miRNA:   3'- -CGUGCCGCUGa---------CGCG----CUGGACGu--------CAG- -5'
1608 5' -58.7 NC_001347.2 + 68702 0.66 0.857657
Target:  5'- aCGCGGCGGCgcaaaGCGCGAgCgcaacGCucGUCg -3'
miRNA:   3'- cGUGCCGCUGa----CGCGCUgGa----CGu-CAG- -5'
1608 5' -58.7 NC_001347.2 + 30590 0.67 0.850168
Target:  5'- cGCGCcgGGCGGCUuccUGCGGCCggccGCGGUg -3'
miRNA:   3'- -CGUG--CCGCUGAc--GCGCUGGa---CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 39163 0.67 0.848648
Target:  5'- cGCGCuGCGACcacuugcgcaugGCGCGGCCcgUGCuGUUg -3'
miRNA:   3'- -CGUGcCGCUGa-----------CGCGCUGG--ACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 153043 0.67 0.842498
Target:  5'- uGCA-GGCGA-UGCGCGAgaCCUGCucGUUg -3'
miRNA:   3'- -CGUgCCGCUgACGCGCU--GGACGu-CAG- -5'
1608 5' -58.7 NC_001347.2 + 100807 0.67 0.833062
Target:  5'- uGCACGGgGACguguaaaacccgGCGCGGCauaGCGGa- -3'
miRNA:   3'- -CGUGCCgCUGa-----------CGCGCUGga-CGUCag -5'
1608 5' -58.7 NC_001347.2 + 82832 0.67 0.829863
Target:  5'- aGCGCGGCGGCUcccaucGUaguauuuaacgacccGCGAgCCUGUcGUCa -3'
miRNA:   3'- -CGUGCCGCUGA------CG---------------CGCU-GGACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 96390 0.67 0.826637
Target:  5'- -gGCGGCGGCcGUGCGcaucGCCUGCc-UCa -3'
miRNA:   3'- cgUGCCGCUGaCGCGC----UGGACGucAG- -5'
1608 5' -58.7 NC_001347.2 + 193825 0.67 0.826637
Target:  5'- cGCACGGC----GCGCGAUCUGgGGcUCu -3'
miRNA:   3'- -CGUGCCGcugaCGCGCUGGACgUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 168809 0.67 0.826637
Target:  5'- cGCGCGGUGGCcaaacggccGCGCGACCcgGCcGa- -3'
miRNA:   3'- -CGUGCCGCUGa--------CGCGCUGGa-CGuCag -5'
1608 5' -58.7 NC_001347.2 + 108155 0.67 0.826637
Target:  5'- -gGCGGCGGCcgcagaggGCGCG-CCgcuCAGUCg -3'
miRNA:   3'- cgUGCCGCUGa-------CGCGCuGGac-GUCAG- -5'
1608 5' -58.7 NC_001347.2 + 194509 0.67 0.81846
Target:  5'- uGCACGGCaucauGCUGgGCGACaCU-CAGUa -3'
miRNA:   3'- -CGUGCCGc----UGACgCGCUG-GAcGUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.