Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1608 | 5' | -58.7 | NC_001347.2 | + | 168809 | 0.67 | 0.826637 |
Target: 5'- cGCGCGGUGGCcaaacggccGCGCGACCcgGCcGa- -3' miRNA: 3'- -CGUGCCGCUGa--------CGCGCUGGa-CGuCag -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 108155 | 0.67 | 0.826637 |
Target: 5'- -gGCGGCGGCcgcagaggGCGCG-CCgcuCAGUCg -3' miRNA: 3'- cgUGCCGCUGa-------CGCGCuGGac-GUCAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 82832 | 0.67 | 0.829863 |
Target: 5'- aGCGCGGCGGCUcccaucGUaguauuuaacgacccGCGAgCCUGUcGUCa -3' miRNA: 3'- -CGUGCCGCUGA------CG---------------CGCU-GGACGuCAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 153043 | 0.67 | 0.842498 |
Target: 5'- uGCA-GGCGA-UGCGCGAgaCCUGCucGUUg -3' miRNA: 3'- -CGUgCCGCUgACGCGCU--GGACGu-CAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 100807 | 0.67 | 0.833062 |
Target: 5'- uGCACGGgGACguguaaaacccgGCGCGGCauaGCGGa- -3' miRNA: 3'- -CGUGCCgCUGa-----------CGCGCUGga-CGUCag -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 30590 | 0.67 | 0.850168 |
Target: 5'- cGCGCcgGGCGGCUuccUGCGGCCggccGCGGUg -3' miRNA: 3'- -CGUG--CCGCUGAc--GCGCUGGa---CGUCAg -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 39163 | 0.67 | 0.848648 |
Target: 5'- cGCGCuGCGACcacuugcgcaugGCGCGGCCcgUGCuGUUg -3' miRNA: 3'- -CGUGcCGCUGa-----------CGCGCUGG--ACGuCAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 87627 | 0.68 | 0.770007 |
Target: 5'- aGCgACGGCGGCUGCuguugcucgccagcgGCGcGCgUGCGGaUCa -3' miRNA: 3'- -CG-UGCCGCUGACG---------------CGC-UGgACGUC-AG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 36371 | 0.68 | 0.757287 |
Target: 5'- aGUugGGCGGCagggGCauGCGGCCUuaGCGGcUCg -3' miRNA: 3'- -CGugCCGCUGa---CG--CGCUGGA--CGUC-AG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 193223 | 0.68 | 0.757287 |
Target: 5'- uGCACGcGCGACUugGC-CGACCUGUGcGUg -3' miRNA: 3'- -CGUGC-CGCUGA--CGcGCUGGACGU-CAg -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 79170 | 0.68 | 0.766394 |
Target: 5'- uCACGGCaGACgaggagcgGCGCGGCCcagaGCGuGUCg -3' miRNA: 3'- cGUGCCG-CUGa-------CGCGCUGGa---CGU-CAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 39952 | 0.68 | 0.801647 |
Target: 5'- aGgACGGCGACgGCgaauaaaaGCGACgUGCGG-Cg -3' miRNA: 3'- -CgUGCCGCUGaCG--------CGCUGgACGUCaG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 180727 | 0.68 | 0.800792 |
Target: 5'- aGCGCGGCGgcaucuACUGCuacgaUGACCUGCGcgacugcGUCu -3' miRNA: 3'- -CGUGCCGC------UGACGc----GCUGGACGU-------CAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 77429 | 0.68 | 0.784271 |
Target: 5'- uGCACcaGGUG-CUGCGCGACCcgUGCGu-- -3' miRNA: 3'- -CGUG--CCGCuGACGCGCUGG--ACGUcag -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 37165 | 0.68 | 0.801647 |
Target: 5'- uUugGGCGG-UG-GCGGCCUugGCGGUCg -3' miRNA: 3'- cGugCCGCUgACgCGCUGGA--CGUCAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 96819 | 0.68 | 0.801647 |
Target: 5'- uGC-CGGCGACUGaCGCcGGCaucgGCAGa- -3' miRNA: 3'- -CGuGCCGCUGAC-GCG-CUGga--CGUCag -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 1937 | 0.69 | 0.748078 |
Target: 5'- cGCGCGGUGGCUGgGCuGCgCgGCGGg- -3' miRNA: 3'- -CGUGCCGCUGACgCGcUG-GaCGUCag -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 148591 | 0.69 | 0.738776 |
Target: 5'- cGUAucUGaGCGGCgGCGUGACCggcggUGCGGUCg -3' miRNA: 3'- -CGU--GC-CGCUGaCGCGCUGG-----ACGUCAG- -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 229713 | 0.69 | 0.719924 |
Target: 5'- uGCGCGGCcucgGGgUGUGCGGCUUcGCAGg- -3' miRNA: 3'- -CGUGCCG----CUgACGCGCUGGA-CGUCag -5' |
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1608 | 5' | -58.7 | NC_001347.2 | + | 76617 | 0.69 | 0.729389 |
Target: 5'- cGCA-GGCGGCgGCuGCGGCCgcgGCGGa- -3' miRNA: 3'- -CGUgCCGCUGaCG-CGCUGGa--CGUCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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