miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 5' -58.7 NC_001347.2 + 155781 1.11 0.001759
Target:  5'- uGCACGGCGACUGCGCGACCUGCAGUCa -3'
miRNA:   3'- -CGUGCCGCUGACGCGCUGGACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 88612 0.83 0.143572
Target:  5'- aGCgGCGGCGGcCUGCGCGGCCUGCAc-- -3'
miRNA:   3'- -CG-UGCCGCU-GACGCGCUGGACGUcag -5'
1608 5' -58.7 NC_001347.2 + 196277 0.79 0.243139
Target:  5'- aGUGCGGCGACggGCGCGACaacgGCGGUa -3'
miRNA:   3'- -CGUGCCGCUGa-CGCGCUGga--CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 105395 0.78 0.278205
Target:  5'- cCGCGGCuacguacGACUGCGCGGCCUGCuG-Cg -3'
miRNA:   3'- cGUGCCG-------CUGACGCGCUGGACGuCaG- -5'
1608 5' -58.7 NC_001347.2 + 2410 0.77 0.332737
Target:  5'- cGCGCGGCGGCUGCuGCccgagcugGACCgcgaGCAGUg -3'
miRNA:   3'- -CGUGCCGCUGACG-CG--------CUGGa---CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 78567 0.74 0.43566
Target:  5'- cGCGUGcGCGaACUGCGCGACCUGC--UCa -3'
miRNA:   3'- -CGUGC-CGC-UGACGCGCUGGACGucAG- -5'
1608 5' -58.7 NC_001347.2 + 39688 0.74 0.470838
Target:  5'- uGCACGGCGcguGCUgGCGCcGCCUuggcgccacGCAGUCu -3'
miRNA:   3'- -CGUGCCGC---UGA-CGCGcUGGA---------CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 197305 0.73 0.48896
Target:  5'- gGCGCGGCGAUgacgaguagGCGCGcACCcgacgGCGGUUu -3'
miRNA:   3'- -CGUGCCGCUGa--------CGCGC-UGGa----CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 126187 0.73 0.48896
Target:  5'- aCACGGCGGCgaggUGCGCGAauucaagcaCCUGguGUa -3'
miRNA:   3'- cGUGCCGCUG----ACGCGCU---------GGACguCAg -5'
1608 5' -58.7 NC_001347.2 + 128435 0.73 0.507402
Target:  5'- cCACGGCGccuGCUGCGUGGCCgucaaGCGG-Cg -3'
miRNA:   3'- cGUGCCGC---UGACGCGCUGGa----CGUCaG- -5'
1608 5' -58.7 NC_001347.2 + 65700 0.72 0.54512
Target:  5'- aCACGGUGcuGCUGCGCGACaCgguggcgGCGGUg -3'
miRNA:   3'- cGUGCCGC--UGACGCGCUG-Ga------CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 138693 0.71 0.612983
Target:  5'- cGCG-GGCGGgUGCGuCGGCUaGCGGUCu -3'
miRNA:   3'- -CGUgCCGCUgACGC-GCUGGaCGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 159482 0.7 0.661966
Target:  5'- gGCGCGGCGGCUgcugaacucGCGCGAUgggugGCGGg- -3'
miRNA:   3'- -CGUGCCGCUGA---------CGCGCUGga---CGUCag -5'
1608 5' -58.7 NC_001347.2 + 176646 0.7 0.665873
Target:  5'- gGCGCGGCGuaaACgaaaGCGCuuuugggcucacccACCUGCAGUCc -3'
miRNA:   3'- -CGUGCCGC---UGa---CGCGc-------------UGGACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 8303 0.7 0.671726
Target:  5'- cGCaACGGCuaggguCUGUGCGGCCaucgUGCAGUUc -3'
miRNA:   3'- -CG-UGCCGcu----GACGCGCUGG----ACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 194016 0.7 0.691148
Target:  5'- gGUGCGGCuGGC-GCGCGACCU-CAGg- -3'
miRNA:   3'- -CGUGCCG-CUGaCGCGCUGGAcGUCag -5'
1608 5' -58.7 NC_001347.2 + 139460 0.7 0.691148
Target:  5'- uGCACGGCGGCgaggcgGUGCG-CgUGCcGUUg -3'
miRNA:   3'- -CGUGCCGCUGa-----CGCGCuGgACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 197695 0.7 0.704641
Target:  5'- cGCAgGGCaGACUGCGUcacggcaaccgcucgGGCCUGCGa-- -3'
miRNA:   3'- -CGUgCCG-CUGACGCG---------------CUGGACGUcag -5'
1608 5' -58.7 NC_001347.2 + 140338 0.69 0.710391
Target:  5'- cCGCGG-GGCUGUGCGagGCCUGUGGg- -3'
miRNA:   3'- cGUGCCgCUGACGCGC--UGGACGUCag -5'
1608 5' -58.7 NC_001347.2 + 612 0.69 0.717071
Target:  5'- cGCGCccgggaGGCGGCUGUGCGcuccagugguacgcGCCUGCcgcgcGUCu -3'
miRNA:   3'- -CGUG------CCGCUGACGCGC--------------UGGACGu----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.