miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 5' -58.7 NC_001347.2 + 5569 0.67 0.81846
Target:  5'- uGCGCGGUGGggGCGUGcCCcGCAGa- -3'
miRNA:   3'- -CGUGCCGCUgaCGCGCuGGaCGUCag -5'
1608 5' -58.7 NC_001347.2 + 158594 0.67 0.81846
Target:  5'- gGCACGGCcuGCUGUGCGcGCgCUGuCAGa- -3'
miRNA:   3'- -CGUGCCGc-UGACGCGC-UG-GAC-GUCag -5'
1608 5' -58.7 NC_001347.2 + 194509 0.67 0.81846
Target:  5'- uGCACGGCaucauGCUGgGCGACaCU-CAGUa -3'
miRNA:   3'- -CGUGCCGc----UGACgCGCUG-GAcGUCAg -5'
1608 5' -58.7 NC_001347.2 + 2107 0.67 0.81846
Target:  5'- cGC-CGGCGGggGCGCGAUUUGCGu-- -3'
miRNA:   3'- -CGuGCCGCUgaCGCGCUGGACGUcag -5'
1608 5' -58.7 NC_001347.2 + 169116 0.67 0.810128
Target:  5'- aCACGGCcucGGCcGCGCGcgccGCgCUGCAGUg -3'
miRNA:   3'- cGUGCCG---CUGaCGCGC----UG-GACGUCAg -5'
1608 5' -58.7 NC_001347.2 + 31394 0.67 0.807599
Target:  5'- -gGCGGUGGCUGCGCcuccucgucggccuGGgCUGCuGUUg -3'
miRNA:   3'- cgUGCCGCUGACGCG--------------CUgGACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 199700 0.67 0.807599
Target:  5'- cGC-CGGCGAgccccgaggcgcgcCcGCuGCGAUCUGCGGUUg -3'
miRNA:   3'- -CGuGCCGCU--------------GaCG-CGCUGGACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 39952 0.68 0.801647
Target:  5'- aGgACGGCGACgGCgaauaaaaGCGACgUGCGG-Cg -3'
miRNA:   3'- -CgUGCCGCUGaCG--------CGCUGgACGUCaG- -5'
1608 5' -58.7 NC_001347.2 + 37165 0.68 0.801647
Target:  5'- uUugGGCGG-UG-GCGGCCUugGCGGUCg -3'
miRNA:   3'- cGugCCGCUgACgCGCUGGA--CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 96819 0.68 0.801647
Target:  5'- uGC-CGGCGACUGaCGCcGGCaucgGCAGa- -3'
miRNA:   3'- -CGuGCCGCUGAC-GCG-CUGga--CGUCag -5'
1608 5' -58.7 NC_001347.2 + 180727 0.68 0.800792
Target:  5'- aGCGCGGCGgcaucuACUGCuacgaUGACCUGCGcgacugcGUCu -3'
miRNA:   3'- -CGUGCCGC------UGACGc----GCUGGACGU-------CAG- -5'
1608 5' -58.7 NC_001347.2 + 77429 0.68 0.784271
Target:  5'- uGCACcaGGUG-CUGCGCGACCcgUGCGu-- -3'
miRNA:   3'- -CGUG--CCGCuGACGCGCUGG--ACGUcag -5'
1608 5' -58.7 NC_001347.2 + 87627 0.68 0.770007
Target:  5'- aGCgACGGCGGCUGCuguugcucgccagcgGCGcGCgUGCGGaUCa -3'
miRNA:   3'- -CG-UGCCGCUGACG---------------CGC-UGgACGUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 79170 0.68 0.766394
Target:  5'- uCACGGCaGACgaggagcgGCGCGGCCcagaGCGuGUCg -3'
miRNA:   3'- cGUGCCG-CUGa-------CGCGCUGGa---CGU-CAG- -5'
1608 5' -58.7 NC_001347.2 + 193223 0.68 0.757287
Target:  5'- uGCACGcGCGACUugGC-CGACCUGUGcGUg -3'
miRNA:   3'- -CGUGC-CGCUGA--CGcGCUGGACGU-CAg -5'
1608 5' -58.7 NC_001347.2 + 36371 0.68 0.757287
Target:  5'- aGUugGGCGGCagggGCauGCGGCCUuaGCGGcUCg -3'
miRNA:   3'- -CGugCCGCUGa---CG--CGCUGGA--CGUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 1937 0.69 0.748078
Target:  5'- cGCGCGGUGGCUGgGCuGCgCgGCGGg- -3'
miRNA:   3'- -CGUGCCGCUGACgCGcUG-GaCGUCag -5'
1608 5' -58.7 NC_001347.2 + 1338 0.69 0.738776
Target:  5'- -aACGGCGuggGCGCGAcggaCCUGC-GUCa -3'
miRNA:   3'- cgUGCCGCugaCGCGCU----GGACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 148591 0.69 0.738776
Target:  5'- cGUAucUGaGCGGCgGCGUGACCggcggUGCGGUCg -3'
miRNA:   3'- -CGU--GC-CGCUGaCGCGCUGG-----ACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 76617 0.69 0.729389
Target:  5'- cGCA-GGCGGCgGCuGCGGCCgcgGCGGa- -3'
miRNA:   3'- -CGUgCCGCUGaCG-CGCUGGa--CGUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.