miRNA: 3'- -CGUGCCGCUGa-CGCGCUGga--CGUCAg -5'
miRNA: 3'- -CG-UGCCGCU-GACGCGCUGGACGUcag -5'
miRNA: 3'- -CGUGCCGCUGACGCGCUGGACGUCAG- -5'
Results 61 - 63 of 63 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1608 | 5' | -58.7 | NC_001347.2 | + | 196277 | 0.79 | 0.243139 |
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Target: 5'- aGUGCGGCGACggGCGCGACaacgGCGGUa -3' miRNA: 3'- -CGUGCCGCUGa-CGCGCUGga--CGUCAg -5' |
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| 1608 | 5' | -58.7 | NC_001347.2 | + | 88612 | 0.83 | 0.143572 |
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Target: 5'- aGCgGCGGCGGcCUGCGCGGCCUGCAc-- -3' miRNA: 3'- -CG-UGCCGCU-GACGCGCUGGACGUcag -5' |
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| 1608 | 5' | -58.7 | NC_001347.2 | + | 155781 | 1.11 | 0.001759 |
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Target: 5'- uGCACGGCGACUGCGCGACCUGCAGUCa -3' miRNA: 3'- -CGUGCCGCUGACGCGCUGGACGUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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