miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 5' -58.7 NC_001347.2 + 234 0.69 0.719924
Target:  5'- uGCGCGGCcucgGGgUGUGCGGCUUcGCAGg- -3'
miRNA:   3'- -CGUGCCG----CUgACGCGCUGGA-CGUCag -5'
1608 5' -58.7 NC_001347.2 + 612 0.69 0.717071
Target:  5'- cGCGCccgggaGGCGGCUGUGCGcuccagugguacgcGCCUGCcgcgcGUCu -3'
miRNA:   3'- -CGUG------CCGCUGACGCGC--------------UGGACGu----CAG- -5'
1608 5' -58.7 NC_001347.2 + 1338 0.69 0.738776
Target:  5'- -aACGGCGuggGCGCGAcggaCCUGC-GUCa -3'
miRNA:   3'- cgUGCCGCugaCGCGCU----GGACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 1937 0.69 0.748078
Target:  5'- cGCGCGGUGGCUGgGCuGCgCgGCGGg- -3'
miRNA:   3'- -CGUGCCGCUGACgCGcUG-GaCGUCag -5'
1608 5' -58.7 NC_001347.2 + 2107 0.67 0.81846
Target:  5'- cGC-CGGCGGggGCGCGAUUUGCGu-- -3'
miRNA:   3'- -CGuGCCGCUgaCGCGCUGGACGUcag -5'
1608 5' -58.7 NC_001347.2 + 2410 0.77 0.332737
Target:  5'- cGCGCGGCGGCUGCuGCccgagcugGACCgcgaGCAGUg -3'
miRNA:   3'- -CGUGCCGCUGACG-CG--------CUGGa---CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 5569 0.67 0.81846
Target:  5'- uGCGCGGUGGggGCGUGcCCcGCAGa- -3'
miRNA:   3'- -CGUGCCGCUgaCGCGCuGGaCGUCag -5'
1608 5' -58.7 NC_001347.2 + 8303 0.7 0.671726
Target:  5'- cGCaACGGCuaggguCUGUGCGGCCaucgUGCAGUUc -3'
miRNA:   3'- -CG-UGCCGcu----GACGCGCUGG----ACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 13953 0.66 0.878979
Target:  5'- cGCGgGGUGGCgaaGCGgGAgcgcugauguaCCUGCAGcUCg -3'
miRNA:   3'- -CGUgCCGCUGa--CGCgCU-----------GGACGUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 30590 0.67 0.850168
Target:  5'- cGCGCcgGGCGGCUuccUGCGGCCggccGCGGUg -3'
miRNA:   3'- -CGUG--CCGCUGAc--GCGCUGGa---CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 31394 0.67 0.807599
Target:  5'- -gGCGGUGGCUGCGCcuccucgucggccuGGgCUGCuGUUg -3'
miRNA:   3'- cgUGCCGCUGACGCG--------------CUgGACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 36371 0.68 0.757287
Target:  5'- aGUugGGCGGCagggGCauGCGGCCUuaGCGGcUCg -3'
miRNA:   3'- -CGugCCGCUGa---CG--CGCUGGA--CGUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 37165 0.68 0.801647
Target:  5'- uUugGGCGG-UG-GCGGCCUugGCGGUCg -3'
miRNA:   3'- cGugCCGCUgACgCGCUGGA--CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 39163 0.67 0.848648
Target:  5'- cGCGCuGCGACcacuugcgcaugGCGCGGCCcgUGCuGUUg -3'
miRNA:   3'- -CGUGcCGCUGa-----------CGCGCUGG--ACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 39688 0.74 0.470838
Target:  5'- uGCACGGCGcguGCUgGCGCcGCCUuggcgccacGCAGUCu -3'
miRNA:   3'- -CGUGCCGC---UGA-CGCGcUGGA---------CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 39952 0.68 0.801647
Target:  5'- aGgACGGCGACgGCgaauaaaaGCGACgUGCGG-Cg -3'
miRNA:   3'- -CgUGCCGCUGaCG--------CGCUGgACGUCaG- -5'
1608 5' -58.7 NC_001347.2 + 65700 0.72 0.54512
Target:  5'- aCACGGUGcuGCUGCGCGACaCgguggcgGCGGUg -3'
miRNA:   3'- cGUGCCGC--UGACGCGCUG-Ga------CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 68702 0.66 0.857657
Target:  5'- aCGCGGCGGCgcaaaGCGCGAgCgcaacGCucGUCg -3'
miRNA:   3'- cGUGCCGCUGa----CGCGCUgGa----CGu-CAG- -5'
1608 5' -58.7 NC_001347.2 + 76617 0.69 0.729389
Target:  5'- cGCA-GGCGGCgGCuGCGGCCgcgGCGGa- -3'
miRNA:   3'- -CGUgCCGCUGaCG-CGCUGGa--CGUCag -5'
1608 5' -58.7 NC_001347.2 + 77429 0.68 0.784271
Target:  5'- uGCACcaGGUG-CUGCGCGACCcgUGCGu-- -3'
miRNA:   3'- -CGUG--CCGCuGACGCGCUGG--ACGUcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.