miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 5' -58.7 NC_001347.2 + 78567 0.74 0.43566
Target:  5'- cGCGUGcGCGaACUGCGCGACCUGC--UCa -3'
miRNA:   3'- -CGUGC-CGC-UGACGCGCUGGACGucAG- -5'
1608 5' -58.7 NC_001347.2 + 79170 0.68 0.766394
Target:  5'- uCACGGCaGACgaggagcgGCGCGGCCcagaGCGuGUCg -3'
miRNA:   3'- cGUGCCG-CUGa-------CGCGCUGGa---CGU-CAG- -5'
1608 5' -58.7 NC_001347.2 + 81634 0.66 0.878979
Target:  5'- cGCACGGCGccGCcGC-CGGCCU-CGGUa -3'
miRNA:   3'- -CGUGCCGC--UGaCGcGCUGGAcGUCAg -5'
1608 5' -58.7 NC_001347.2 + 82832 0.67 0.829863
Target:  5'- aGCGCGGCGGCUcccaucGUaguauuuaacgacccGCGAgCCUGUcGUCa -3'
miRNA:   3'- -CGUGCCGCUGA------CG---------------CGCU-GGACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 84377 0.66 0.872068
Target:  5'- gGCGCGGaguccuGGgUGUGUcgGGCCgcgGCAGUCg -3'
miRNA:   3'- -CGUGCCg-----CUgACGCG--CUGGa--CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 87627 0.68 0.770007
Target:  5'- aGCgACGGCGGCUGCuguugcucgccagcgGCGcGCgUGCGGaUCa -3'
miRNA:   3'- -CG-UGCCGCUGACG---------------CGC-UGgACGUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 88612 0.83 0.143572
Target:  5'- aGCgGCGGCGGcCUGCGCGGCCUGCAc-- -3'
miRNA:   3'- -CG-UGCCGCU-GACGCGCUGGACGUcag -5'
1608 5' -58.7 NC_001347.2 + 96390 0.67 0.826637
Target:  5'- -gGCGGCGGCcGUGCGcaucGCCUGCc-UCa -3'
miRNA:   3'- cgUGCCGCUGaCGCGC----UGGACGucAG- -5'
1608 5' -58.7 NC_001347.2 + 96819 0.68 0.801647
Target:  5'- uGC-CGGCGACUGaCGCcGGCaucgGCAGa- -3'
miRNA:   3'- -CGuGCCGCUGAC-GCG-CUGga--CGUCag -5'
1608 5' -58.7 NC_001347.2 + 97931 0.66 0.885689
Target:  5'- aCACGGCGAaucaGuUGCGACa-GCGGUCc -3'
miRNA:   3'- cGUGCCGCUga--C-GCGCUGgaCGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 100807 0.67 0.833062
Target:  5'- uGCACGGgGACguguaaaacccgGCGCGGCauaGCGGa- -3'
miRNA:   3'- -CGUGCCgCUGa-----------CGCGCUGga-CGUCag -5'
1608 5' -58.7 NC_001347.2 + 105395 0.78 0.278205
Target:  5'- cCGCGGCuacguacGACUGCGCGGCCUGCuG-Cg -3'
miRNA:   3'- cGUGCCG-------CUGACGCGCUGGACGuCaG- -5'
1608 5' -58.7 NC_001347.2 + 108155 0.67 0.826637
Target:  5'- -gGCGGCGGCcgcagaggGCGCG-CCgcuCAGUCg -3'
miRNA:   3'- cgUGCCGCUGa-------CGCGCuGGac-GUCAG- -5'
1608 5' -58.7 NC_001347.2 + 111638 0.69 0.719924
Target:  5'- -gACGGCGAC-GUGCGuACCgcgGCAGa- -3'
miRNA:   3'- cgUGCCGCUGaCGCGC-UGGa--CGUCag -5'
1608 5' -58.7 NC_001347.2 + 116772 0.66 0.885689
Target:  5'- -aGCuGCGACaGCGUGACCgcGgGGUCg -3'
miRNA:   3'- cgUGcCGCUGaCGCGCUGGa-CgUCAG- -5'
1608 5' -58.7 NC_001347.2 + 126187 0.73 0.48896
Target:  5'- aCACGGCGGCgaggUGCGCGAauucaagcaCCUGguGUa -3'
miRNA:   3'- cGUGCCGCUG----ACGCGCU---------GGACguCAg -5'
1608 5' -58.7 NC_001347.2 + 128435 0.73 0.507402
Target:  5'- cCACGGCGccuGCUGCGUGGCCgucaaGCGG-Cg -3'
miRNA:   3'- cGUGCCGC---UGACGCGCUGGa----CGUCaG- -5'
1608 5' -58.7 NC_001347.2 + 138693 0.71 0.612983
Target:  5'- cGCG-GGCGGgUGCGuCGGCUaGCGGUCu -3'
miRNA:   3'- -CGUgCCGCUgACGC-GCUGGaCGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 139460 0.7 0.691148
Target:  5'- uGCACGGCGGCgaggcgGUGCG-CgUGCcGUUg -3'
miRNA:   3'- -CGUGCCGCUGa-----CGCGCuGgACGuCAG- -5'
1608 5' -58.7 NC_001347.2 + 140338 0.69 0.710391
Target:  5'- cCGCGG-GGCUGUGCGagGCCUGUGGg- -3'
miRNA:   3'- cGUGCCgCUGACGCGC--UGGACGUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.