miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1608 5' -58.7 NC_001347.2 + 229713 0.69 0.719924
Target:  5'- uGCGCGGCcucgGGgUGUGCGGCUUcGCAGg- -3'
miRNA:   3'- -CGUGCCG----CUgACGCGCUGGA-CGUCag -5'
1608 5' -58.7 NC_001347.2 + 229534 0.66 0.885689
Target:  5'- gGCGCGGCGGgUGgGUGugUgccgGguGUg -3'
miRNA:   3'- -CGUGCCGCUgACgCGCugGa---CguCAg -5'
1608 5' -58.7 NC_001347.2 + 210404 0.66 0.872068
Target:  5'- aUACGGCGugauGCUGUGaUGACg-GCGGUCu -3'
miRNA:   3'- cGUGCCGC----UGACGC-GCUGgaCGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 199700 0.67 0.807599
Target:  5'- cGC-CGGCGAgccccgaggcgcgcCcGCuGCGAUCUGCGGUUg -3'
miRNA:   3'- -CGuGCCGCU--------------GaCG-CGCUGGACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 197695 0.7 0.704641
Target:  5'- cGCAgGGCaGACUGCGUcacggcaaccgcucgGGCCUGCGa-- -3'
miRNA:   3'- -CGUgCCG-CUGACGCG---------------CUGGACGUcag -5'
1608 5' -58.7 NC_001347.2 + 197305 0.73 0.48896
Target:  5'- gGCGCGGCGAUgacgaguagGCGCGcACCcgacgGCGGUUu -3'
miRNA:   3'- -CGUGCCGCUGa--------CGCGC-UGGa----CGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 196277 0.79 0.243139
Target:  5'- aGUGCGGCGACggGCGCGACaacgGCGGUa -3'
miRNA:   3'- -CGUGCCGCUGa-CGCGCUGga--CGUCAg -5'
1608 5' -58.7 NC_001347.2 + 194509 0.67 0.81846
Target:  5'- uGCACGGCaucauGCUGgGCGACaCU-CAGUa -3'
miRNA:   3'- -CGUGCCGc----UGACgCGCUG-GAcGUCAg -5'
1608 5' -58.7 NC_001347.2 + 194016 0.7 0.691148
Target:  5'- gGUGCGGCuGGC-GCGCGACCU-CAGg- -3'
miRNA:   3'- -CGUGCCG-CUGaCGCGCUGGAcGUCag -5'
1608 5' -58.7 NC_001347.2 + 193825 0.67 0.826637
Target:  5'- cGCACGGC----GCGCGAUCUGgGGcUCu -3'
miRNA:   3'- -CGUGCCGcugaCGCGCUGGACgUC-AG- -5'
1608 5' -58.7 NC_001347.2 + 193223 0.68 0.757287
Target:  5'- uGCACGcGCGACUugGC-CGACCUGUGcGUg -3'
miRNA:   3'- -CGUGC-CGCUGA--CGcGCUGGACGU-CAg -5'
1608 5' -58.7 NC_001347.2 + 191257 0.67 0.81846
Target:  5'- gGCACGGCGuaaUGCGggcaGGCgUGCGG-Ca -3'
miRNA:   3'- -CGUGCCGCug-ACGCg---CUGgACGUCaG- -5'
1608 5' -58.7 NC_001347.2 + 180727 0.68 0.800792
Target:  5'- aGCGCGGCGgcaucuACUGCuacgaUGACCUGCGcgacugcGUCu -3'
miRNA:   3'- -CGUGCCGC------UGACGc----GCUGGACGU-------CAG- -5'
1608 5' -58.7 NC_001347.2 + 176646 0.7 0.665873
Target:  5'- gGCGCGGCGuaaACgaaaGCGCuuuugggcucacccACCUGCAGUCc -3'
miRNA:   3'- -CGUGCCGC---UGa---CGCGc-------------UGGACGUCAG- -5'
1608 5' -58.7 NC_001347.2 + 174783 0.66 0.885028
Target:  5'- -gGCGGCGACgugggucgcgaguUcauguuggcGCGCGACCUGCuGg- -3'
miRNA:   3'- cgUGCCGCUG-------------A---------CGCGCUGGACGuCag -5'
1608 5' -58.7 NC_001347.2 + 169116 0.67 0.810128
Target:  5'- aCACGGCcucGGCcGCGCGcgccGCgCUGCAGUg -3'
miRNA:   3'- cGUGCCG---CUGaCGCGC----UG-GACGUCAg -5'
1608 5' -58.7 NC_001347.2 + 168809 0.67 0.826637
Target:  5'- cGCGCGGUGGCcaaacggccGCGCGACCcgGCcGa- -3'
miRNA:   3'- -CGUGCCGCUGa--------CGCGCUGGa-CGuCag -5'
1608 5' -58.7 NC_001347.2 + 159482 0.7 0.661966
Target:  5'- gGCGCGGCGGCUgcugaacucGCGCGAUgggugGCGGg- -3'
miRNA:   3'- -CGUGCCGCUGA---------CGCGCUGga---CGUCag -5'
1608 5' -58.7 NC_001347.2 + 158594 0.67 0.81846
Target:  5'- gGCACGGCcuGCUGUGCGcGCgCUGuCAGa- -3'
miRNA:   3'- -CGUGCCGc-UGACGCGC-UG-GAC-GUCag -5'
1608 5' -58.7 NC_001347.2 + 158102 0.66 0.857657
Target:  5'- uGCGCGGCGGCcucaucggcaGCGUcaucGACCUGCcgcucugguGUCu -3'
miRNA:   3'- -CGUGCCGCUGa---------CGCG----CUGGACGu--------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.