miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16083 5' -55.8 NC_004065.1 + 149663 0.66 0.961639
Target:  5'- -gCGCCGCAGcGCGUugaccguguccaGGGUCuGcAGGUGa -3'
miRNA:   3'- caGCGGCGUC-CGCA------------UCCAG-C-UUCAUg -5'
16083 5' -55.8 NC_004065.1 + 109579 0.66 0.961639
Target:  5'- -cCGCCGCccgacagcaagaGGGCccggacgAGGUCGGAGaGCg -3'
miRNA:   3'- caGCGGCG------------UCCGca-----UCCAGCUUCaUG- -5'
16083 5' -55.8 NC_004065.1 + 888 0.66 0.961639
Target:  5'- -cCGCCGgcaugcuaCAGGCGUuacGGGUUGAccgccgcgcaGGUACc -3'
miRNA:   3'- caGCGGC--------GUCCGCA---UCCAGCU----------UCAUG- -5'
16083 5' -55.8 NC_004065.1 + 223952 0.66 0.958131
Target:  5'- -aCGCCaCGcGGCGUA-GUCGAauGGUACa -3'
miRNA:   3'- caGCGGcGU-CCGCAUcCAGCU--UCAUG- -5'
16083 5' -55.8 NC_004065.1 + 120814 0.66 0.954409
Target:  5'- cGUCGCCgaGCAGGaagAGGcCGAGGcGCc -3'
miRNA:   3'- -CAGCGG--CGUCCgcaUCCaGCUUCaUG- -5'
16083 5' -55.8 NC_004065.1 + 65559 0.66 0.95047
Target:  5'- -gCGUCGCcGGCG--GGUCGcGAGUACc -3'
miRNA:   3'- caGCGGCGuCCGCauCCAGC-UUCAUG- -5'
16083 5' -55.8 NC_004065.1 + 68640 0.66 0.95047
Target:  5'- cGUCGCUGgcaCAGGCGgccgAGGcguacgcgcagUCGgcGUACg -3'
miRNA:   3'- -CAGCGGC---GUCCGCa---UCC-----------AGCuuCAUG- -5'
16083 5' -55.8 NC_004065.1 + 196834 0.66 0.95047
Target:  5'- -cUGCgGCAGGUGcGGG-CGAcGGUACa -3'
miRNA:   3'- caGCGgCGUCCGCaUCCaGCU-UCAUG- -5'
16083 5' -55.8 NC_004065.1 + 18488 0.66 0.94631
Target:  5'- cGUCGCCGCAuucgucGCGUuauucguGGUCGucggacuccuGGUGCa -3'
miRNA:   3'- -CAGCGGCGUc-----CGCAu------CCAGCu---------UCAUG- -5'
16083 5' -55.8 NC_004065.1 + 79636 0.66 0.94631
Target:  5'- -aCGCUGCGGGCGUGcGuGUCGgcGc-- -3'
miRNA:   3'- caGCGGCGUCCGCAU-C-CAGCuuCaug -5'
16083 5' -55.8 NC_004065.1 + 148856 0.66 0.94631
Target:  5'- -cCGCCGCgaucgaggAGGCGgcGG-CGggGgGCg -3'
miRNA:   3'- caGCGGCG--------UCCGCauCCaGCuuCaUG- -5'
16083 5' -55.8 NC_004065.1 + 202967 0.67 0.941926
Target:  5'- aGUCGCCuguaCGGGCGgAGGUgGggGa-- -3'
miRNA:   3'- -CAGCGGc---GUCCGCaUCCAgCuuCaug -5'
16083 5' -55.8 NC_004065.1 + 66202 0.67 0.941926
Target:  5'- cUCGCUGacgaAGaGCGUGGcGUCGcuGUACa -3'
miRNA:   3'- cAGCGGCg---UC-CGCAUC-CAGCuuCAUG- -5'
16083 5' -55.8 NC_004065.1 + 116120 0.67 0.937317
Target:  5'- gGUCGCCGgAGGUagcuGGUCGgcGUccuGCg -3'
miRNA:   3'- -CAGCGGCgUCCGcau-CCAGCuuCA---UG- -5'
16083 5' -55.8 NC_004065.1 + 82624 0.67 0.932481
Target:  5'- --gGUCGUAGGUGUGGaagcgcagcucGUCGGAGUAg -3'
miRNA:   3'- cagCGGCGUCCGCAUC-----------CAGCUUCAUg -5'
16083 5' -55.8 NC_004065.1 + 96860 0.67 0.932481
Target:  5'- uGUCGCCGCGGGCGccguucuGGcCGuGG-ACc -3'
miRNA:   3'- -CAGCGGCGUCCGCau-----CCaGCuUCaUG- -5'
16083 5' -55.8 NC_004065.1 + 118295 0.67 0.93248
Target:  5'- -aCGUCGCAGGCGaAGG-CGAcg-GCg -3'
miRNA:   3'- caGCGGCGUCCGCaUCCaGCUucaUG- -5'
16083 5' -55.8 NC_004065.1 + 116646 0.67 0.927415
Target:  5'- --aGCCGCAGGCGUucGUCcuGAGGg-- -3'
miRNA:   3'- cagCGGCGUCCGCAucCAG--CUUCaug -5'
16083 5' -55.8 NC_004065.1 + 36123 0.67 0.927415
Target:  5'- -cCGCUGCcGGCGgcGGUUGuGGUGg -3'
miRNA:   3'- caGCGGCGuCCGCauCCAGCuUCAUg -5'
16083 5' -55.8 NC_004065.1 + 100146 0.67 0.927415
Target:  5'- -cCGCCGCAGcGCGcggcacAGGUCGAAc--- -3'
miRNA:   3'- caGCGGCGUC-CGCa-----UCCAGCUUcaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.