Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16084 | 3' | -57.7 | NC_004065.1 | + | 106029 | 1.07 | 0.003433 |
Target: 5'- uACAGCCCUAGCGCCAUGAGGAUCGCUa -3' miRNA: 3'- -UGUCGGGAUCGCGGUACUCCUAGCGA- -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 197813 | 0.66 | 0.907956 |
Target: 5'- --cGCCCgcGGCGCCAcguUG-GGGUCGUc -3' miRNA: 3'- uguCGGGa-UCGCGGU---ACuCCUAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 55776 | 0.66 | 0.907956 |
Target: 5'- gGCGGUCUcGGCGCCGaGcAGGcgAUCGCg -3' miRNA: 3'- -UGUCGGGaUCGCGGUaC-UCC--UAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 33741 | 0.66 | 0.907956 |
Target: 5'- uCGGCCC-AGCGCCuUGcAGGAgUCGg- -3' miRNA: 3'- uGUCGGGaUCGCGGuAC-UCCU-AGCga -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 200967 | 0.66 | 0.901883 |
Target: 5'- gGCGGCUCcaggaucgguGCGUgGUGAcGGGUCGCg -3' miRNA: 3'- -UGUCGGGau--------CGCGgUACU-CCUAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 200330 | 0.66 | 0.901883 |
Target: 5'- cCAGCCCgucggGGCGCC--GAGGcUCaGCa -3' miRNA: 3'- uGUCGGGa----UCGCGGuaCUCCuAG-CGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 135659 | 0.66 | 0.89559 |
Target: 5'- cGCGGCCgUAacgcGCGUCggGGGGcUCGCg -3' miRNA: 3'- -UGUCGGgAU----CGCGGuaCUCCuAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 227038 | 0.66 | 0.882349 |
Target: 5'- gAUGGUUCgucGGCGCCA-GAGaGGUCGCUu -3' miRNA: 3'- -UGUCGGGa--UCGCGGUaCUC-CUAGCGA- -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 145931 | 0.66 | 0.882349 |
Target: 5'- uGCAGaCCCUGGcCGCCcUGAcGGUCGg- -3' miRNA: 3'- -UGUC-GGGAUC-GCGGuACUcCUAGCga -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 132876 | 0.67 | 0.853369 |
Target: 5'- uCGGCUUgcGCgGCCA-GAGGGUCGCc -3' miRNA: 3'- uGUCGGGauCG-CGGUaCUCCUAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 224283 | 0.67 | 0.837712 |
Target: 5'- aGCAGCgCUAGCGCguUGccGAUCaGCa -3' miRNA: 3'- -UGUCGgGAUCGCGguACucCUAG-CGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 126476 | 0.67 | 0.829614 |
Target: 5'- -aAGCCCU-GCGCgAUGuuGGcgCGCUg -3' miRNA: 3'- ugUCGGGAuCGCGgUACu-CCuaGCGA- -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 144983 | 0.7 | 0.701856 |
Target: 5'- aACAGCUgcGGCGUCAgaugGuGGAUCGCg -3' miRNA: 3'- -UGUCGGgaUCGCGGUa---CuCCUAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 30115 | 0.72 | 0.60247 |
Target: 5'- uGCAGCCCcGGCgGCC-UGGGGAggGCg -3' miRNA: 3'- -UGUCGGGaUCG-CGGuACUCCUagCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 168596 | 0.69 | 0.771313 |
Target: 5'- cCGGCCCUggguaggGGCcucuacucgaccgucGUCAUGAuGGAUCGCUg -3' miRNA: 3'- uGUCGGGA-------UCG---------------CGGUACU-CCUAGCGA- -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 99507 | 0.7 | 0.711621 |
Target: 5'- -gGGuCCCUGGCGCgCAcGAGGAggacgCGCg -3' miRNA: 3'- ugUC-GGGAUCGCG-GUaCUCCUa----GCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 114991 | 0.71 | 0.652359 |
Target: 5'- uCGGCCCUGGCgGCCGcGcGGAUCuGCg -3' miRNA: 3'- uGUCGGGAUCG-CGGUaCuCCUAG-CGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 159953 | 0.72 | 0.592527 |
Target: 5'- -gGGUCC--GCGCCuuUGAGGAUCGCg -3' miRNA: 3'- ugUCGGGauCGCGGu-ACUCCUAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 99841 | 0.72 | 0.592527 |
Target: 5'- cACGGCCCcgucgcaccagaUGGCGCC---GGGGUCGCg -3' miRNA: 3'- -UGUCGGG------------AUCGCGGuacUCCUAGCGa -5' |
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16084 | 3' | -57.7 | NC_004065.1 | + | 195661 | 0.66 | 0.882349 |
Target: 5'- gGCAGCCg-AGCGgCG-GAGGGUgGCg -3' miRNA: 3'- -UGUCGGgaUCGCgGUaCUCCUAgCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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