miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16084 5' -56.5 NC_004065.1 + 70336 0.66 0.936539
Target:  5'- -cGGCGGCGACgGCGGcg-AGGaGCGc -3'
miRNA:   3'- uuUCGCUGCUGgUGCCucaUCC-CGUa -5'
16084 5' -56.5 NC_004065.1 + 168560 0.66 0.936539
Target:  5'- -cAGCGGCGGCgGCGGcgacagcGGGCGUc -3'
miRNA:   3'- uuUCGCUGCUGgUGCCucau---CCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 191442 0.66 0.931619
Target:  5'- -cGGUGACGACCGaGGAGUccucgacgccgAGGuGCGg -3'
miRNA:   3'- uuUCGCUGCUGGUgCCUCA-----------UCC-CGUa -5'
16084 5' -56.5 NC_004065.1 + 58904 0.66 0.931619
Target:  5'- -uGGaCGAUGAgCGCGGGGguGGGCAg -3'
miRNA:   3'- uuUC-GCUGCUgGUGCCUCauCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 20879 0.66 0.926465
Target:  5'- cGAGCGAcaCGGCCGCGGcGcUGGGGa-- -3'
miRNA:   3'- uUUCGCU--GCUGGUGCCuC-AUCCCgua -5'
16084 5' -56.5 NC_004065.1 + 31521 0.66 0.921079
Target:  5'- --uGCGACGuGCCGCGGGGcuaccccGGCAUg -3'
miRNA:   3'- uuuCGCUGC-UGGUGCCUCauc----CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 198012 0.66 0.921079
Target:  5'- --cGCGAUGGCCuCGGAGgcGGucGCGg -3'
miRNA:   3'- uuuCGCUGCUGGuGCCUCauCC--CGUa -5'
16084 5' -56.5 NC_004065.1 + 166503 0.66 0.921079
Target:  5'- --cGCGGCGAuCUACGGccgcgAGGGCGa -3'
miRNA:   3'- uuuCGCUGCU-GGUGCCuca--UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 109228 0.66 0.921079
Target:  5'- -cGGCGACgggaGACgGCGGcGGUAGcGGCGUc -3'
miRNA:   3'- uuUCGCUG----CUGgUGCC-UCAUC-CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 208029 0.66 0.91546
Target:  5'- -cGGCGAUGACCGuCGGcGUGGccguGGCGg -3'
miRNA:   3'- uuUCGCUGCUGGU-GCCuCAUC----CCGUa -5'
16084 5' -56.5 NC_004065.1 + 109711 0.66 0.91546
Target:  5'- --cGCGGCGACCcuCGG---GGGGCAa -3'
miRNA:   3'- uuuCGCUGCUGGu-GCCucaUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 30122 0.66 0.90961
Target:  5'- ---cCGGCGGCCugGGG--AGGGCGg -3'
miRNA:   3'- uuucGCUGCUGGugCCUcaUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 112565 0.66 0.90961
Target:  5'- -cGGCGAgCGGCCGCGGAGccGGacgacGCAg -3'
miRNA:   3'- uuUCGCU-GCUGGUGCCUCauCC-----CGUa -5'
16084 5' -56.5 NC_004065.1 + 143289 0.67 0.90353
Target:  5'- aAGGGCcgaGGCGGCguCGGGGgccGGGGCAg -3'
miRNA:   3'- -UUUCG---CUGCUGguGCCUCa--UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 95154 0.67 0.897222
Target:  5'- -uAGCgGACGACCuCGuuGAGUGGGGgGUa -3'
miRNA:   3'- uuUCG-CUGCUGGuGC--CUCAUCCCgUA- -5'
16084 5' -56.5 NC_004065.1 + 96757 0.67 0.89069
Target:  5'- cGAGCagGGCGACgGCGGAGgc-GGCAUc -3'
miRNA:   3'- uUUCG--CUGCUGgUGCCUCaucCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 44274 0.67 0.883936
Target:  5'- cGAGCGaACGACCGgGcGGgcGGGCGa -3'
miRNA:   3'- uUUCGC-UGCUGGUgCcUCauCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 200798 0.67 0.883248
Target:  5'- cGGGCGACGGCgucucggCGCGGGGaucggacGGGGCGa -3'
miRNA:   3'- uUUCGCUGCUG-------GUGCCUCa------UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 62398 0.67 0.876965
Target:  5'- gGGGGUGGCGGCCGCGGAuccagcaccaGaGGuGGCGUu -3'
miRNA:   3'- -UUUCGCUGCUGGUGCCU----------CaUC-CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 143337 0.67 0.874831
Target:  5'- gGGGGCGGCGGCagggcgagggaacaCugGGGGggacgAGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUG--------------GugCCUCa----UCCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.