miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16084 5' -56.5 NC_004065.1 + 106064 1.03 0.008599
Target:  5'- cAAAGCGACGACCACGGAGUAGGGCAUc -3'
miRNA:   3'- -UUUCGCUGCUGGUGCCUCAUCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 26365 0.77 0.38671
Target:  5'- -uGGCGACGGCgGCGGGGauacGGGGCGUu -3'
miRNA:   3'- uuUCGCUGCUGgUGCCUCa---UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 142846 0.73 0.551324
Target:  5'- --cGCGACGACCGCGcGGUgcaGGGGCu- -3'
miRNA:   3'- uuuCGCUGCUGGUGCcUCA---UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 59776 0.73 0.55924
Target:  5'- -cGGCGGCGGCCACGGccacgauaccGGGGCAa -3'
miRNA:   3'- uuUCGCUGCUGGUGCCuca-------UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 67671 0.73 0.561224
Target:  5'- gGGAGCGGCGGCgGCGGcGgcGGGCc- -3'
miRNA:   3'- -UUUCGCUGCUGgUGCCuCauCCCGua -5'
16084 5' -56.5 NC_004065.1 + 59147 0.73 0.571172
Target:  5'- cGAGGCGACGACgGCGaGAGUccgaucGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGgUGC-CUCAu-----CCCGUa -5'
16084 5' -56.5 NC_004065.1 + 127218 0.73 0.581161
Target:  5'- gGGAGCGGCGGCCGCG-AGgaucGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGGUGCcUCau--CCCGUa -5'
16084 5' -56.5 NC_004065.1 + 91178 0.72 0.621408
Target:  5'- cAGGCGACGGCCGCGGAagcgccgucggcGUGcGcGGCAUc -3'
miRNA:   3'- uUUCGCUGCUGGUGCCU------------CAU-C-CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 56612 0.71 0.690842
Target:  5'- cGAGCaGGCGGCCGCGGAuGUGGaugcgguGGCAg -3'
miRNA:   3'- uUUCG-CUGCUGGUGCCU-CAUC-------CCGUa -5'
16084 5' -56.5 NC_004065.1 + 71952 0.71 0.691838
Target:  5'- gGAGGCGACG-CCGCcgguGGAGccGGGCAg -3'
miRNA:   3'- -UUUCGCUGCuGGUG----CCUCauCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 181124 0.71 0.701773
Target:  5'- cGGGGUGGCGGCgGCGGGgagagaaaacGUAGGGUAa -3'
miRNA:   3'- -UUUCGCUGCUGgUGCCU----------CAUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 57961 0.71 0.71165
Target:  5'- --cGCGGCGGCCACGGAGgaccGCGa -3'
miRNA:   3'- uuuCGCUGCUGGUGCCUCauccCGUa -5'
16084 5' -56.5 NC_004065.1 + 159715 0.7 0.721462
Target:  5'- uAGAaCGACGACCACGGAGaugauaccaGGGGCc- -3'
miRNA:   3'- -UUUcGCUGCUGGUGCCUCa--------UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 79327 0.7 0.750412
Target:  5'- -cGGCGGCGguucguGCgCGCGGAGgacgAGGGCGg -3'
miRNA:   3'- uuUCGCUGC------UG-GUGCCUCa---UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 102623 0.7 0.750412
Target:  5'- -cGGUGACGGCCugGGAGa--GGCGg -3'
miRNA:   3'- uuUCGCUGCUGGugCCUCaucCCGUa -5'
16084 5' -56.5 NC_004065.1 + 114834 0.7 0.750412
Target:  5'- --cGCGGCGGCCACGGccGGauccAGGGCc- -3'
miRNA:   3'- uuuCGCUGCUGGUGCC--UCa---UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 114911 0.69 0.778452
Target:  5'- -cGGUGGCu-CCGgGGGGUGGGGCGg -3'
miRNA:   3'- uuUCGCUGcuGGUgCCUCAUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 30456 0.69 0.787555
Target:  5'- cGAAGCGGCgucugGACCGCGGcacgaUGGGGCGc -3'
miRNA:   3'- -UUUCGCUG-----CUGGUGCCuc---AUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 163637 0.69 0.787555
Target:  5'- cGAGCGGCGGCgGCGGcGGcAGcGGCAg -3'
miRNA:   3'- uUUCGCUGCUGgUGCC-UCaUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 80790 0.69 0.796521
Target:  5'- cAGGCGACGGCgGCGGcGGcGGcGGCAg -3'
miRNA:   3'- uUUCGCUGCUGgUGCC-UCaUC-CCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.