miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16084 5' -56.5 NC_004065.1 + 19713 0.68 0.862389
Target:  5'- gGAGGCGuGCGGCCAUccGAGaUGGGGCGc -3'
miRNA:   3'- -UUUCGC-UGCUGGUGc-CUC-AUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 121598 0.68 0.854795
Target:  5'- ---uCGACGGCC-CGGgaccccccGGUAGGGCAg -3'
miRNA:   3'- uuucGCUGCUGGuGCC--------UCAUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 167482 0.68 0.847004
Target:  5'- -cAGCGAgGuuGCUGCGGAGgaaauggGGGGCAUu -3'
miRNA:   3'- uuUCGCUgC--UGGUGCCUCa------UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 135064 0.68 0.847004
Target:  5'- --cGCGGCaGCCGCGGAGc-GGGCc- -3'
miRNA:   3'- uuuCGCUGcUGGUGCCUCauCCCGua -5'
16084 5' -56.5 NC_004065.1 + 65045 0.68 0.839024
Target:  5'- aGAAGaCGACGACgA-GGAGgAGGGCGg -3'
miRNA:   3'- -UUUC-GCUGCUGgUgCCUCaUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 61344 0.68 0.839024
Target:  5'- --cGCGGCGACCcgggcgaagACGGAGaugGGGGUc- -3'
miRNA:   3'- uuuCGCUGCUGG---------UGCCUCa--UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 132808 0.68 0.839024
Target:  5'- --cGgGuuGACCACGGcGUAGGGCu- -3'
miRNA:   3'- uuuCgCugCUGGUGCCuCAUCCCGua -5'
16084 5' -56.5 NC_004065.1 + 171970 0.69 0.82252
Target:  5'- -cGGCGGCGGCgGCGGA--GGGGUc- -3'
miRNA:   3'- uuUCGCUGCUGgUGCCUcaUCCCGua -5'
16084 5' -56.5 NC_004065.1 + 50303 0.69 0.821677
Target:  5'- --cGCGGCGAUCGCGaggcaacaacagaGAGUGGuGGCAc -3'
miRNA:   3'- uuuCGCUGCUGGUGC-------------CUCAUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 75480 0.69 0.814012
Target:  5'- gAGGGCGAUGGCgGCGGcgAGgaucAGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGgUGCC--UCa---UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 63600 0.69 0.814012
Target:  5'- aGAGGCuGACGAgCACGGugcuGGGCAUc -3'
miRNA:   3'- -UUUCG-CUGCUgGUGCCucauCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 81186 0.69 0.814012
Target:  5'- --cGCGGCGGCCGCcucguggccGAGcgAGGGCAUg -3'
miRNA:   3'- uuuCGCUGCUGGUGc--------CUCa-UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 30497 0.69 0.805343
Target:  5'- uGAGGCGACGGCguUGGAugauuccgGGGGCGUu -3'
miRNA:   3'- -UUUCGCUGCUGguGCCUca------UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 142765 0.69 0.805343
Target:  5'- --cGCGACGACgACGGccugcuGGUGGuGGCGc -3'
miRNA:   3'- uuuCGCUGCUGgUGCC------UCAUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 80790 0.69 0.796521
Target:  5'- cAGGCGACGGCgGCGGcGGcGGcGGCAg -3'
miRNA:   3'- uUUCGCUGCUGgUGCC-UCaUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 139849 0.69 0.796521
Target:  5'- gGAGGCGGgCGACgGCGGAGgc-GGCGg -3'
miRNA:   3'- -UUUCGCU-GCUGgUGCCUCaucCCGUa -5'
16084 5' -56.5 NC_004065.1 + 163637 0.69 0.787555
Target:  5'- cGAGCGGCGGCgGCGGcGGcAGcGGCAg -3'
miRNA:   3'- uUUCGCUGCUGgUGCC-UCaUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 30456 0.69 0.787555
Target:  5'- cGAAGCGGCgucugGACCGCGGcacgaUGGGGCGc -3'
miRNA:   3'- -UUUCGCUG-----CUGGUGCCuc---AUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 114911 0.69 0.778452
Target:  5'- -cGGUGGCu-CCGgGGGGUGGGGCGg -3'
miRNA:   3'- uuUCGCUGcuGGUgCCUCAUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 114834 0.7 0.750412
Target:  5'- --cGCGGCGGCCACGGccGGauccAGGGCc- -3'
miRNA:   3'- uuuCGCUGCUGGUGCC--UCa---UCCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.