miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16084 5' -56.5 NC_004065.1 + 19713 0.68 0.862389
Target:  5'- gGAGGCGuGCGGCCAUccGAGaUGGGGCGc -3'
miRNA:   3'- -UUUCGC-UGCUGGUGc-CUC-AUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 20879 0.66 0.926465
Target:  5'- cGAGCGAcaCGGCCGCGGcGcUGGGGa-- -3'
miRNA:   3'- uUUCGCU--GCUGGUGCCuC-AUCCCgua -5'
16084 5' -56.5 NC_004065.1 + 26365 0.77 0.38671
Target:  5'- -uGGCGACGGCgGCGGGGauacGGGGCGUu -3'
miRNA:   3'- uuUCGCUGCUGgUGCCUCa---UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 30122 0.66 0.90961
Target:  5'- ---cCGGCGGCCugGGG--AGGGCGg -3'
miRNA:   3'- uuucGCUGCUGGugCCUcaUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 30456 0.69 0.787555
Target:  5'- cGAAGCGGCgucugGACCGCGGcacgaUGGGGCGc -3'
miRNA:   3'- -UUUCGCUG-----CUGGUGCCuc---AUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 30497 0.69 0.805343
Target:  5'- uGAGGCGACGGCguUGGAugauuccgGGGGCGUu -3'
miRNA:   3'- -UUUCGCUGCUGguGCCUca------UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 31521 0.66 0.921079
Target:  5'- --uGCGACGuGCCGCGGGGcuaccccGGCAUg -3'
miRNA:   3'- uuuCGCUGC-UGGUGCCUCauc----CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 44274 0.67 0.883936
Target:  5'- cGAGCGaACGACCGgGcGGgcGGGCGa -3'
miRNA:   3'- uUUCGC-UGCUGGUgCcUCauCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 50303 0.69 0.821677
Target:  5'- --cGCGGCGAUCGCGaggcaacaacagaGAGUGGuGGCAc -3'
miRNA:   3'- uuuCGCUGCUGGUGC-------------CUCAUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 56612 0.71 0.690842
Target:  5'- cGAGCaGGCGGCCGCGGAuGUGGaugcgguGGCAg -3'
miRNA:   3'- uUUCG-CUGCUGGUGCCU-CAUC-------CCGUa -5'
16084 5' -56.5 NC_004065.1 + 57961 0.71 0.71165
Target:  5'- --cGCGGCGGCCACGGAGgaccGCGa -3'
miRNA:   3'- uuuCGCUGCUGGUGCCUCauccCGUa -5'
16084 5' -56.5 NC_004065.1 + 58904 0.66 0.931619
Target:  5'- -uGGaCGAUGAgCGCGGGGguGGGCAg -3'
miRNA:   3'- uuUC-GCUGCUgGUGCCUCauCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 59147 0.73 0.571172
Target:  5'- cGAGGCGACGACgGCGaGAGUccgaucGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGgUGC-CUCAu-----CCCGUa -5'
16084 5' -56.5 NC_004065.1 + 59776 0.73 0.55924
Target:  5'- -cGGCGGCGGCCACGGccacgauaccGGGGCAa -3'
miRNA:   3'- uuUCGCUGCUGGUGCCuca-------UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 61344 0.68 0.839024
Target:  5'- --cGCGGCGACCcgggcgaagACGGAGaugGGGGUc- -3'
miRNA:   3'- uuuCGCUGCUGG---------UGCCUCa--UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 62398 0.67 0.876965
Target:  5'- gGGGGUGGCGGCCGCGGAuccagcaccaGaGGuGGCGUu -3'
miRNA:   3'- -UUUCGCUGCUGGUGCCU----------CaUC-CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 63600 0.69 0.814012
Target:  5'- aGAGGCuGACGAgCACGGugcuGGGCAUc -3'
miRNA:   3'- -UUUCG-CUGCUgGUGCCucauCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 65045 0.68 0.839024
Target:  5'- aGAAGaCGACGACgA-GGAGgAGGGCGg -3'
miRNA:   3'- -UUUC-GCUGCUGgUgCCUCaUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 67671 0.73 0.561224
Target:  5'- gGGAGCGGCGGCgGCGGcGgcGGGCc- -3'
miRNA:   3'- -UUUCGCUGCUGgUGCCuCauCCCGua -5'
16084 5' -56.5 NC_004065.1 + 70336 0.66 0.936539
Target:  5'- -cGGCGGCGACgGCGGcg-AGGaGCGc -3'
miRNA:   3'- uuUCGCUGCUGgUGCCucaUCC-CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.