miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16084 5' -56.5 NC_004065.1 + 135064 0.68 0.847004
Target:  5'- --cGCGGCaGCCGCGGAGc-GGGCc- -3'
miRNA:   3'- uuuCGCUGcUGGUGCCUCauCCCGua -5'
16084 5' -56.5 NC_004065.1 + 142765 0.69 0.805343
Target:  5'- --cGCGACGACgACGGccugcuGGUGGuGGCGc -3'
miRNA:   3'- uuuCGCUGCUGgUGCC------UCAUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 81186 0.69 0.814012
Target:  5'- --cGCGGCGGCCGCcucguggccGAGcgAGGGCAUg -3'
miRNA:   3'- uuuCGCUGCUGGUGc--------CUCa-UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 63600 0.69 0.814012
Target:  5'- aGAGGCuGACGAgCACGGugcuGGGCAUc -3'
miRNA:   3'- -UUUCG-CUGCUgGUGCCucauCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 75480 0.69 0.814012
Target:  5'- gAGGGCGAUGGCgGCGGcgAGgaucAGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGgUGCC--UCa---UCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 50303 0.69 0.821677
Target:  5'- --cGCGGCGAUCGCGaggcaacaacagaGAGUGGuGGCAc -3'
miRNA:   3'- uuuCGCUGCUGGUGC-------------CUCAUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 132808 0.68 0.839024
Target:  5'- --cGgGuuGACCACGGcGUAGGGCu- -3'
miRNA:   3'- uuuCgCugCUGGUGCCuCAUCCCGua -5'
16084 5' -56.5 NC_004065.1 + 61344 0.68 0.839024
Target:  5'- --cGCGGCGACCcgggcgaagACGGAGaugGGGGUc- -3'
miRNA:   3'- uuuCGCUGCUGG---------UGCCUCa--UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 65045 0.68 0.839024
Target:  5'- aGAAGaCGACGACgA-GGAGgAGGGCGg -3'
miRNA:   3'- -UUUC-GCUGCUGgUgCCUCaUCCCGUa -5'
16084 5' -56.5 NC_004065.1 + 30497 0.69 0.805343
Target:  5'- uGAGGCGACGGCguUGGAugauuccgGGGGCGUu -3'
miRNA:   3'- -UUUCGCUGCUGguGCCUca------UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 163637 0.69 0.787555
Target:  5'- cGAGCGGCGGCgGCGGcGGcAGcGGCAg -3'
miRNA:   3'- uUUCGCUGCUGgUGCC-UCaUC-CCGUa -5'
16084 5' -56.5 NC_004065.1 + 159715 0.7 0.721462
Target:  5'- uAGAaCGACGACCACGGAGaugauaccaGGGGCc- -3'
miRNA:   3'- -UUUcGCUGCUGGUGCCUCa--------UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 26365 0.77 0.38671
Target:  5'- -uGGCGACGGCgGCGGGGauacGGGGCGUu -3'
miRNA:   3'- uuUCGCUGCUGgUGCCUCa---UCCCGUA- -5'
16084 5' -56.5 NC_004065.1 + 142846 0.73 0.551324
Target:  5'- --cGCGACGACCGCGcGGUgcaGGGGCu- -3'
miRNA:   3'- uuuCGCUGCUGGUGCcUCA---UCCCGua -5'
16084 5' -56.5 NC_004065.1 + 67671 0.73 0.561224
Target:  5'- gGGAGCGGCGGCgGCGGcGgcGGGCc- -3'
miRNA:   3'- -UUUCGCUGCUGgUGCCuCauCCCGua -5'
16084 5' -56.5 NC_004065.1 + 59147 0.73 0.571172
Target:  5'- cGAGGCGACGACgGCGaGAGUccgaucGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGgUGC-CUCAu-----CCCGUa -5'
16084 5' -56.5 NC_004065.1 + 127218 0.73 0.581161
Target:  5'- gGGAGCGGCGGCCGCG-AGgaucGGGCGc -3'
miRNA:   3'- -UUUCGCUGCUGGUGCcUCau--CCCGUa -5'
16084 5' -56.5 NC_004065.1 + 91178 0.72 0.621408
Target:  5'- cAGGCGACGGCCGCGGAagcgccgucggcGUGcGcGGCAUc -3'
miRNA:   3'- uUUCGCUGCUGGUGCCU------------CAU-C-CCGUA- -5'
16084 5' -56.5 NC_004065.1 + 56612 0.71 0.690842
Target:  5'- cGAGCaGGCGGCCGCGGAuGUGGaugcgguGGCAg -3'
miRNA:   3'- uUUCG-CUGCUGGUGCCU-CAUC-------CCGUa -5'
16084 5' -56.5 NC_004065.1 + 71952 0.71 0.691838
Target:  5'- gGAGGCGACG-CCGCcgguGGAGccGGGCAg -3'
miRNA:   3'- -UUUCGCUGCuGGUG----CCUCauCCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.