miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16085 3' -51.5 NC_004065.1 + 180080 0.66 0.99869
Target:  5'- gGCAGAugUCauccggacgGuCGCgGUUCGGUaGAGCu -3'
miRNA:   3'- -CGUCUugAG---------C-GUGgCAAGCCA-CUUGc -5'
16085 3' -51.5 NC_004065.1 + 63069 0.66 0.99869
Target:  5'- cGCAGGAgUCGC-CgGUcgcCGGcGAGCGa -3'
miRNA:   3'- -CGUCUUgAGCGuGgCAa--GCCaCUUGC- -5'
16085 3' -51.5 NC_004065.1 + 219247 0.66 0.99869
Target:  5'- aGCuGGAGCaCGCGCCGc-CGGUGuAACu -3'
miRNA:   3'- -CG-UCUUGaGCGUGGCaaGCCAC-UUGc -5'
16085 3' -51.5 NC_004065.1 + 30088 0.66 0.99869
Target:  5'- gGCGGAGCgCGCGCUGaugugUCaGGgacGGACGa -3'
miRNA:   3'- -CGUCUUGaGCGUGGCa----AG-CCa--CUUGC- -5'
16085 3' -51.5 NC_004065.1 + 211138 0.66 0.998431
Target:  5'- aCAGggUcUG-GCCGUUCGGggggGAGCGg -3'
miRNA:   3'- cGUCuuGaGCgUGGCAAGCCa---CUUGC- -5'
16085 3' -51.5 NC_004065.1 + 181205 0.66 0.998431
Target:  5'- cGguGAGaggaUgGUGCCGUUCGGccggcugcgUGGACGg -3'
miRNA:   3'- -CguCUUg---AgCGUGGCAAGCC---------ACUUGC- -5'
16085 3' -51.5 NC_004065.1 + 43446 0.66 0.998431
Target:  5'- aCGGAGCgC-CGCCGUccUCGGUGuaGACGu -3'
miRNA:   3'- cGUCUUGaGcGUGGCA--AGCCAC--UUGC- -5'
16085 3' -51.5 NC_004065.1 + 150351 0.66 0.998431
Target:  5'- uGCGGAugUCGgGCaCGUUCGGc----- -3'
miRNA:   3'- -CGUCUugAGCgUG-GCAAGCCacuugc -5'
16085 3' -51.5 NC_004065.1 + 86840 0.66 0.998431
Target:  5'- gGUAGAGCggGgGCCGcUCGGcGGACa -3'
miRNA:   3'- -CGUCUUGagCgUGGCaAGCCaCUUGc -5'
16085 3' -51.5 NC_004065.1 + 194794 0.66 0.998403
Target:  5'- cGCAGGGCgaUCGUcgagccccugaacGCCGUggCGGUGGcCGc -3'
miRNA:   3'- -CGUCUUG--AGCG-------------UGGCAa-GCCACUuGC- -5'
16085 3' -51.5 NC_004065.1 + 41960 0.66 0.99778
Target:  5'- cCGGGuucucgacGCUgGCGCUGaucUCGGUGAACa -3'
miRNA:   3'- cGUCU--------UGAgCGUGGCa--AGCCACUUGc -5'
16085 3' -51.5 NC_004065.1 + 133874 0.66 0.99778
Target:  5'- cGCAaGACggCGCGCCGggCGGaacGACGg -3'
miRNA:   3'- -CGUcUUGa-GCGUGGCaaGCCac-UUGC- -5'
16085 3' -51.5 NC_004065.1 + 78600 0.66 0.99778
Target:  5'- cGUcGAACgcgacgucgUCGCGCCGccugaGGUGAACGc -3'
miRNA:   3'- -CGuCUUG---------AGCGUGGCaag--CCACUUGC- -5'
16085 3' -51.5 NC_004065.1 + 39681 0.66 0.997379
Target:  5'- -aGGAuACUugacCGCgACCGUUCGuGUGAAUGg -3'
miRNA:   3'- cgUCU-UGA----GCG-UGGCAAGC-CACUUGC- -5'
16085 3' -51.5 NC_004065.1 + 65874 0.66 0.997379
Target:  5'- uGCAu-GCUagccCACCG-UCGGUGAACGu -3'
miRNA:   3'- -CGUcuUGAgc--GUGGCaAGCCACUUGC- -5'
16085 3' -51.5 NC_004065.1 + 49823 0.66 0.997379
Target:  5'- uCAGGAaUUGCACCGUcUCGGUGuGAUu -3'
miRNA:   3'- cGUCUUgAGCGUGGCA-AGCCAC-UUGc -5'
16085 3' -51.5 NC_004065.1 + 43851 0.66 0.997379
Target:  5'- aCAGAGCggaGaCGCCGUggaguUCGGUG-GCGg -3'
miRNA:   3'- cGUCUUGag-C-GUGGCA-----AGCCACuUGC- -5'
16085 3' -51.5 NC_004065.1 + 167651 0.66 0.997379
Target:  5'- gGCGGGACggcCGUACCGUgcUCGGaacccGCGa -3'
miRNA:   3'- -CGUCUUGa--GCGUGGCA--AGCCacu--UGC- -5'
16085 3' -51.5 NC_004065.1 + 103524 0.66 0.997379
Target:  5'- cGCAGA---CGCACCc--CGGUGggUGg -3'
miRNA:   3'- -CGUCUugaGCGUGGcaaGCCACuuGC- -5'
16085 3' -51.5 NC_004065.1 + 61094 0.66 0.997335
Target:  5'- cGCAGAugUCGUgcaggguGCCGUugaucgugcucUCGGccgaguagaacUGAGCGc -3'
miRNA:   3'- -CGUCUugAGCG-------UGGCA-----------AGCC-----------ACUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.