miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16085 5' -51.7 NC_004065.1 + 159591 0.65 0.997212
Target:  5'- aUCGUCACGucguUCGCUuucguguugucgugGAUgcUCGCGUUCa -3'
miRNA:   3'- aAGUAGUGCu---AGUGG--------------CUA--GGCGCAAG- -5'
16085 5' -51.7 NC_004065.1 + 39934 0.66 0.996874
Target:  5'- ---uUCGCGAUCcuCCGGUgCCGCGg-- -3'
miRNA:   3'- aaguAGUGCUAGu-GGCUA-GGCGCaag -5'
16085 5' -51.7 NC_004065.1 + 200996 0.66 0.996874
Target:  5'- --gGUCGCGA-CGCCGGUcugacucgaggCCGCGUg- -3'
miRNA:   3'- aagUAGUGCUaGUGGCUA-----------GGCGCAag -5'
16085 5' -51.7 NC_004065.1 + 47308 0.66 0.996334
Target:  5'- -gCGUCGCccguGAg-GCCGAUCCGCGg-- -3'
miRNA:   3'- aaGUAGUG----CUagUGGCUAGGCGCaag -5'
16085 5' -51.7 NC_004065.1 + 37406 0.66 0.996334
Target:  5'- cUUCGaCGCGGUguCCGAcggCGCGUUCa -3'
miRNA:   3'- -AAGUaGUGCUAguGGCUag-GCGCAAG- -5'
16085 5' -51.7 NC_004065.1 + 23724 0.66 0.995719
Target:  5'- --aGUCGCGGUCcguCCGGUCCGUc--- -3'
miRNA:   3'- aagUAGUGCUAGu--GGCUAGGCGcaag -5'
16085 5' -51.7 NC_004065.1 + 152982 0.66 0.995719
Target:  5'- gUguUCuCG-UCGCCGAUCCGCGc-- -3'
miRNA:   3'- aAguAGuGCuAGUGGCUAGGCGCaag -5'
16085 5' -51.7 NC_004065.1 + 43504 0.66 0.995653
Target:  5'- -aCAUCACuuggagagacggaGAUCcgacCCGGUCCGCGcgCa -3'
miRNA:   3'- aaGUAGUG-------------CUAGu---GGCUAGGCGCaaG- -5'
16085 5' -51.7 NC_004065.1 + 100704 0.66 0.995312
Target:  5'- gUUCGUCGCGGUggaagaguagcccacCAUCGugucggcuUCCGUGUUCc -3'
miRNA:   3'- -AAGUAGUGCUA---------------GUGGCu-------AGGCGCAAG- -5'
16085 5' -51.7 NC_004065.1 + 76169 0.66 0.995023
Target:  5'- gUCGUCGCGAUCAgcgUCGAUCgaCGCa--- -3'
miRNA:   3'- aAGUAGUGCUAGU---GGCUAG--GCGcaag -5'
16085 5' -51.7 NC_004065.1 + 188308 0.66 0.994563
Target:  5'- aUCAggAUGAUCACCGuguugauggccgucUCCGCGUcccUCg -3'
miRNA:   3'- aAGUagUGCUAGUGGCu-------------AGGCGCA---AG- -5'
16085 5' -51.7 NC_004065.1 + 11085 0.66 0.994238
Target:  5'- cUCGUCACGA-CACCuGGuUCUGCGa-- -3'
miRNA:   3'- aAGUAGUGCUaGUGG-CU-AGGCGCaag -5'
16085 5' -51.7 NC_004065.1 + 1247 0.67 0.993355
Target:  5'- aUCgAUCGCGAUUACUGGaggccgggcgugUCgGUGUUCg -3'
miRNA:   3'- aAG-UAGUGCUAGUGGCU------------AGgCGCAAG- -5'
16085 5' -51.7 NC_004065.1 + 200025 0.67 0.993355
Target:  5'- gUCGUCAgGGgcaggUGCCGuUCCGCGUa- -3'
miRNA:   3'- aAGUAGUgCUa----GUGGCuAGGCGCAag -5'
16085 5' -51.7 NC_004065.1 + 116743 0.67 0.993355
Target:  5'- -cCGUCAUGGUgAagaCGAUCCGCGc-- -3'
miRNA:   3'- aaGUAGUGCUAgUg--GCUAGGCGCaag -5'
16085 5' -51.7 NC_004065.1 + 176687 0.67 0.992263
Target:  5'- cUUCuacuUCAUGAUCGCCGugguuuuGUCCGUGg-- -3'
miRNA:   3'- -AAGu---AGUGCUAGUGGC-------UAGGCGCaag -5'
16085 5' -51.7 NC_004065.1 + 157136 0.67 0.991267
Target:  5'- aUCAUCGCGuUCACCGcguaGUUgGUGUUg -3'
miRNA:   3'- aAGUAGUGCuAGUGGC----UAGgCGCAAg -5'
16085 5' -51.7 NC_004065.1 + 229296 0.67 0.991267
Target:  5'- cUgGUCGCGuugcGUCACCGGcgUCGCGUUa -3'
miRNA:   3'- aAgUAGUGC----UAGUGGCUa-GGCGCAAg -5'
16085 5' -51.7 NC_004065.1 + 117963 0.67 0.991267
Target:  5'- cUUCGUCucuGCGGUUACCGAacUCCGuCGg-- -3'
miRNA:   3'- -AAGUAG---UGCUAGUGGCU--AGGC-GCaag -5'
16085 5' -51.7 NC_004065.1 + 124933 0.67 0.990045
Target:  5'- -cCAcCACGcgCACCaGGUUCGCGUUg -3'
miRNA:   3'- aaGUaGUGCuaGUGG-CUAGGCGCAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.