miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16086 5' -53.2 NC_004065.1 + 163234 0.66 0.991144
Target:  5'- gGACGUCcGCucAUGUUUCGucGGCGCAGc -3'
miRNA:   3'- -CUGUAGaCGcuUGCGAAGC--CUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 74135 0.66 0.991144
Target:  5'- gGACGUCgagGCGggUGCc-CGGGCcgagaaccccGCAGg -3'
miRNA:   3'- -CUGUAGa--CGCuuGCGaaGCCUG----------CGUC- -5'
16086 5' -53.2 NC_004065.1 + 24982 0.66 0.990428
Target:  5'- gGGCGUCccucggccuuuugugUGUGGGCGUccgUGGGCGCGGc -3'
miRNA:   3'- -CUGUAG---------------ACGCUUGCGaa-GCCUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 169303 0.66 0.989926
Target:  5'- aACGUCUaCGAgaagauggaGCGUgaCGGGCGCAGc -3'
miRNA:   3'- cUGUAGAcGCU---------UGCGaaGCCUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 144153 0.66 0.989926
Target:  5'- cAC-UCUGCGu-CGCUUCgcaGGGCGCGu -3'
miRNA:   3'- cUGuAGACGCuuGCGAAG---CCUGCGUc -5'
16086 5' -53.2 NC_004065.1 + 162402 0.66 0.989404
Target:  5'- cGGCAUCU-CGAACGCcguacggugcgaCGGACGCc- -3'
miRNA:   3'- -CUGUAGAcGCUUGCGaa----------GCCUGCGuc -5'
16086 5' -53.2 NC_004065.1 + 165998 0.66 0.988581
Target:  5'- gGACGUgCUGCaggaAACGa--CGGACGCGGg -3'
miRNA:   3'- -CUGUA-GACGc---UUGCgaaGCCUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 153326 0.66 0.988581
Target:  5'- cGACGcgcUCUuCGAACGCUUCuucggGGACGgCGGc -3'
miRNA:   3'- -CUGU---AGAcGCUUGCGAAG-----CCUGC-GUC- -5'
16086 5' -53.2 NC_004065.1 + 56617 0.66 0.988581
Target:  5'- aGGCggCcGCGGAUGUggaugCGGugGCAGc -3'
miRNA:   3'- -CUGuaGaCGCUUGCGaa---GCCugCGUC- -5'
16086 5' -53.2 NC_004065.1 + 188804 0.66 0.988581
Target:  5'- uGCAcgaUGCGcACGUUUCGGAUGUAu -3'
miRNA:   3'- cUGUag-ACGCuUGCGAAGCCUGCGUc -5'
16086 5' -53.2 NC_004065.1 + 121822 0.66 0.987101
Target:  5'- ---uUCUGCGGACGga--GGugGCGGg -3'
miRNA:   3'- cuguAGACGCUUGCgaagCCugCGUC- -5'
16086 5' -53.2 NC_004065.1 + 33048 0.66 0.987101
Target:  5'- uACGUC-GCGGACGCagCGGAUGagaaAGa -3'
miRNA:   3'- cUGUAGaCGCUUGCGaaGCCUGCg---UC- -5'
16086 5' -53.2 NC_004065.1 + 100733 0.66 0.985477
Target:  5'- uACGUCUaGCGAGgaguuacuauUGCacaCGGACGCGGg -3'
miRNA:   3'- cUGUAGA-CGCUU----------GCGaa-GCCUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 195272 0.66 0.985477
Target:  5'- cGCGUCauCGGACGCUcCGaGAUGCAGu -3'
miRNA:   3'- cUGUAGacGCUUGCGAaGC-CUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 19419 0.66 0.985477
Target:  5'- cGGCGUCgGCGGAgGUgcCGGAgGCAc -3'
miRNA:   3'- -CUGUAGaCGCUUgCGaaGCCUgCGUc -5'
16086 5' -53.2 NC_004065.1 + 100987 0.67 0.983701
Target:  5'- gGGCGUCUGCacGAugguCGCUUUGagguugauGACGCGGu -3'
miRNA:   3'- -CUGUAGACG--CUu---GCGAAGC--------CUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 11092 0.67 0.983701
Target:  5'- cGACAccugguUCUGCGAACGUUUCaacGAcCGCGu -3'
miRNA:   3'- -CUGU------AGACGCUUGCGAAGc--CU-GCGUc -5'
16086 5' -53.2 NC_004065.1 + 115059 0.67 0.981766
Target:  5'- gGGCAaCgGCGcGCGCga-GGACGCGGc -3'
miRNA:   3'- -CUGUaGaCGCuUGCGaagCCUGCGUC- -5'
16086 5' -53.2 NC_004065.1 + 155234 0.67 0.979662
Target:  5'- aGCAUCUugcGCGAGCGCUgccgCGaGACucccuGCGGa -3'
miRNA:   3'- cUGUAGA---CGCUUGCGAa---GC-CUG-----CGUC- -5'
16086 5' -53.2 NC_004065.1 + 142598 0.67 0.977384
Target:  5'- cACAgCaGCGAagcgguGCGCUUCGGcAUGCAGu -3'
miRNA:   3'- cUGUaGaCGCU------UGCGAAGCC-UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.