miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 163418 0.66 0.961084
Target:  5'- aGAGCG-UCGGCAacgCCGCGGugGC-CGc -3'
miRNA:   3'- -CUUGCgAGUCGUg--GGCGUCugUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 23189 0.66 0.961084
Target:  5'- uGAuCGCcuuUCGGCugguguaucugACCgUGCAGGCGCACGg -3'
miRNA:   3'- -CUuGCG---AGUCG-----------UGG-GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 127636 0.66 0.961084
Target:  5'- --cCGCUCGcGCugCCGCugcGGCGC-CGa -3'
miRNA:   3'- cuuGCGAGU-CGugGGCGu--CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 126407 0.66 0.961084
Target:  5'- uAACGCgUCAGCuGCCCGCGGuCccgGCuGCGg -3'
miRNA:   3'- cUUGCG-AGUCG-UGGGCGUCuG---UG-UGC- -5'
16088 3' -55.8 NC_004065.1 + 29996 0.66 0.961084
Target:  5'- -uACGCggaaCGGCACCUGCcccuGACGacCGCGg -3'
miRNA:   3'- cuUGCGa---GUCGUGGGCGu---CUGU--GUGC- -5'
16088 3' -55.8 NC_004065.1 + 150810 0.66 0.961084
Target:  5'- -cACGCUCGGguCUCGCAGGauCugGu -3'
miRNA:   3'- cuUGCGAGUCguGGGCGUCUguGugC- -5'
16088 3' -55.8 NC_004065.1 + 77369 0.66 0.960739
Target:  5'- cAGCGCgacgAGCACCCGguGAugguggagaacauCACGCu -3'
miRNA:   3'- cUUGCGag--UCGUGGGCguCU-------------GUGUGc -5'
16088 3' -55.8 NC_004065.1 + 130100 0.66 0.957903
Target:  5'- --cCGUUCGGCGCCCGCccuucugugucugucGGCGCAa- -3'
miRNA:   3'- cuuGCGAGUCGUGGGCGu--------------CUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 126492 0.66 0.957539
Target:  5'- uGGCGCgCuGCACCCGCGucgccaugcGcCGCGCGa -3'
miRNA:   3'- cUUGCGaGuCGUGGGCGU---------CuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 152269 0.66 0.957539
Target:  5'- ---aGCUC-GCACa-GCAGGCACACc -3'
miRNA:   3'- cuugCGAGuCGUGggCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 53908 0.66 0.957539
Target:  5'- cGACGCgaggAGCGCCCGUcaGGAUAC-CGc -3'
miRNA:   3'- cUUGCGag--UCGUGGGCG--UCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 50454 0.66 0.957539
Target:  5'- uGGCGCcccuUCAGCGCCCaGCAcGAUGCuCGu -3'
miRNA:   3'- cUUGCG----AGUCGUGGG-CGU-CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 170755 0.66 0.95531
Target:  5'- aAACGCUaagCAGCACgaCGCggcuaaguaagcgaaGGACACACa -3'
miRNA:   3'- cUUGCGA---GUCGUGg-GCG---------------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 200885 0.66 0.95378
Target:  5'- cAGgGCUCGGCuGCCCGUc-GCGCugGg -3'
miRNA:   3'- cUUgCGAGUCG-UGGGCGucUGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 102422 0.66 0.95378
Target:  5'- aGAGCGCcggUCccgAGCAgCgGUAGGCGCACu -3'
miRNA:   3'- -CUUGCG---AG---UCGUgGgCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 151358 0.66 0.95378
Target:  5'- cGGGCGCcgCGGCGCCgGCcgcuGCGCugGc -3'
miRNA:   3'- -CUUGCGa-GUCGUGGgCGuc--UGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 197175 0.66 0.95378
Target:  5'- gGGACGC-CAGCucCCCGCGGuucgACugGu -3'
miRNA:   3'- -CUUGCGaGUCGu-GGGCGUCug--UGugC- -5'
16088 3' -55.8 NC_004065.1 + 228452 0.66 0.95378
Target:  5'- aGACGga-GGuCGCUCGCAGGCACGCc -3'
miRNA:   3'- cUUGCgagUC-GUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 105490 0.66 0.949802
Target:  5'- gGAGCuGUUC--CACCUGguGGCGCACGu -3'
miRNA:   3'- -CUUG-CGAGucGUGGGCguCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 38789 0.66 0.949802
Target:  5'- uGACGgUCuGGCGCCCGCAGAgcccCAUcCGc -3'
miRNA:   3'- cUUGCgAG-UCGUGGGCGUCU----GUGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.