Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16088 | 3' | -55.8 | NC_004065.1 | + | 150810 | 0.66 | 0.961084 |
Target: 5'- -cACGCUCGGguCUCGCAGGauCugGu -3' miRNA: 3'- cuUGCGAGUCguGGGCGUCUguGugC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 102422 | 0.66 | 0.95378 |
Target: 5'- aGAGCGCcggUCccgAGCAgCgGUAGGCGCACu -3' miRNA: 3'- -CUUGCG---AG---UCGUgGgCGUCUGUGUGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 155305 | 0.66 | 0.949802 |
Target: 5'- cGAACGCUa--CugUCGCAGGCGCccGCGc -3' miRNA: 3'- -CUUGCGAgucGugGGCGUCUGUG--UGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 80322 | 0.66 | 0.94517 |
Target: 5'- cGGCGCggccgCGGCcccccggcguucgACCUGCAGACccuggACACGg -3' miRNA: 3'- cUUGCGa----GUCG-------------UGGGCGUCUG-----UGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 163418 | 0.66 | 0.961084 |
Target: 5'- aGAGCG-UCGGCAacgCCGCGGugGC-CGc -3' miRNA: 3'- -CUUGCgAGUCGUg--GGCGUCugUGuGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 50454 | 0.66 | 0.957539 |
Target: 5'- uGGCGCcccuUCAGCGCCCaGCAcGAUGCuCGu -3' miRNA: 3'- cUUGCG----AGUCGUGGG-CGU-CUGUGuGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 23189 | 0.66 | 0.961084 |
Target: 5'- uGAuCGCcuuUCGGCugguguaucugACCgUGCAGGCGCACGg -3' miRNA: 3'- -CUuGCG---AGUCG-----------UGG-GCGUCUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 105490 | 0.66 | 0.949802 |
Target: 5'- gGAGCuGUUC--CACCUGguGGCGCACGu -3' miRNA: 3'- -CUUG-CGAGucGUGGGCguCUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 126407 | 0.66 | 0.961084 |
Target: 5'- uAACGCgUCAGCuGCCCGCGGuCccgGCuGCGg -3' miRNA: 3'- cUUGCG-AGUCG-UGGGCGUCuG---UG-UGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 127636 | 0.66 | 0.961084 |
Target: 5'- --cCGCUCGcGCugCCGCugcGGCGC-CGa -3' miRNA: 3'- cuuGCGAGU-CGugGGCGu--CUGUGuGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 163908 | 0.66 | 0.949802 |
Target: 5'- -cGCGC-CAGCGCCuCGguGAUgucgccccccaGCGCGu -3' miRNA: 3'- cuUGCGaGUCGUGG-GCguCUG-----------UGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 120906 | 0.66 | 0.947309 |
Target: 5'- cGGCGa-CAGCACCCGCaguccguacuugugcGGcguGCACACGg -3' miRNA: 3'- cUUGCgaGUCGUGGGCG---------------UC---UGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 43125 | 0.66 | 0.945602 |
Target: 5'- -cGCGCUC-GCGaagaCCGCcggccgcggaAGACACGCGc -3' miRNA: 3'- cuUGCGAGuCGUg---GGCG----------UCUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 187351 | 0.66 | 0.94517 |
Target: 5'- cGAACGCgagcagcuucgcgUCAGCGuCCCgaucuuugccaGCuGGCGCGCGg -3' miRNA: 3'- -CUUGCG-------------AGUCGU-GGG-----------CGuCUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 77369 | 0.66 | 0.960739 |
Target: 5'- cAGCGCgacgAGCACCCGguGAugguggagaacauCACGCu -3' miRNA: 3'- cUUGCGag--UCGUGGGCguCU-------------GUGUGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 126492 | 0.66 | 0.957539 |
Target: 5'- uGGCGCgCuGCACCCGCGucgccaugcGcCGCGCGa -3' miRNA: 3'- cUUGCGaGuCGUGGGCGU---------CuGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 170755 | 0.66 | 0.95531 |
Target: 5'- aAACGCUaagCAGCACgaCGCggcuaaguaagcgaaGGACACACa -3' miRNA: 3'- cUUGCGA---GUCGUGg-GCG---------------UCUGUGUGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 38789 | 0.66 | 0.949802 |
Target: 5'- uGACGgUCuGGCGCCCGCAGAgcccCAUcCGc -3' miRNA: 3'- cUUGCgAG-UCGUGGGCGUCU----GUGuGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 73509 | 0.66 | 0.948565 |
Target: 5'- cGGugGCUUuuuuagcgaucgagAGCAUCCGCAGAagguccaGCugGu -3' miRNA: 3'- -CUugCGAG--------------UCGUGGGCGUCUg------UGugC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 197175 | 0.66 | 0.95378 |
Target: 5'- gGGACGC-CAGCucCCCGCGGuucgACugGu -3' miRNA: 3'- -CUUGCGaGUCGu-GGGCGUCug--UGugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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