miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 83163 0.66 0.945602
Target:  5'- -cGCGUUCAcGCGCCgaUGCAGACcagGCGCu -3'
miRNA:   3'- cuUGCGAGU-CGUGG--GCGUCUG---UGUGc -5'
16088 3' -55.8 NC_004065.1 + 53908 0.66 0.957539
Target:  5'- cGACGCgaggAGCGCCCGUcaGGAUAC-CGc -3'
miRNA:   3'- cUUGCGag--UCGUGGGCG--UCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 155305 0.66 0.949802
Target:  5'- cGAACGCUa--CugUCGCAGGCGCccGCGc -3'
miRNA:   3'- -CUUGCGAgucGugGGCGUCUGUG--UGC- -5'
16088 3' -55.8 NC_004065.1 + 126492 0.66 0.957539
Target:  5'- uGGCGCgCuGCACCCGCGucgccaugcGcCGCGCGa -3'
miRNA:   3'- cUUGCGaGuCGUGGGCGU---------CuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 50454 0.66 0.957539
Target:  5'- uGGCGCcccuUCAGCGCCCaGCAcGAUGCuCGu -3'
miRNA:   3'- cUUGCG----AGUCGUGGG-CGU-CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 127636 0.66 0.961084
Target:  5'- --cCGCUCGcGCugCCGCugcGGCGC-CGa -3'
miRNA:   3'- cuuGCGAGU-CGugGGCGu--CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 150810 0.66 0.961084
Target:  5'- -cACGCUCGGguCUCGCAGGauCugGu -3'
miRNA:   3'- cuUGCGAGUCguGGGCGUCUguGugC- -5'
16088 3' -55.8 NC_004065.1 + 43125 0.66 0.945602
Target:  5'- -cGCGCUC-GCGaagaCCGCcggccgcggaAGACACGCGc -3'
miRNA:   3'- cuUGCGAGuCGUg---GGCG----------UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 69686 0.67 0.941178
Target:  5'- aGACGgaCAuCGacucCCCGCAGACGCugGa -3'
miRNA:   3'- cUUGCgaGUcGU----GGGCGUCUGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 84717 0.67 0.921207
Target:  5'- --uCGCUCGGCACCCGaagcGGCG-ACGu -3'
miRNA:   3'- cuuGCGAGUCGUGGGCgu--CUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 132128 0.67 0.93165
Target:  5'- uGAACGC-CGGguCCaCGUAGACGCuCa -3'
miRNA:   3'- -CUUGCGaGUCguGG-GCGUCUGUGuGc -5'
16088 3' -55.8 NC_004065.1 + 104248 0.67 0.915643
Target:  5'- aGGCGCUCAagacucucuGCcacCCCGC-GAUACACGa -3'
miRNA:   3'- cUUGCGAGU---------CGu--GGGCGuCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 227932 0.67 0.93165
Target:  5'- -cACGCUCGGCAUaCGCGcGCAgCGCGu -3'
miRNA:   3'- cuUGCGAGUCGUGgGCGUcUGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 126230 0.67 0.924966
Target:  5'- aGAACgGCgCGGCGCUCGCGGAgaucaaccagcugcUGCGCGa -3'
miRNA:   3'- -CUUG-CGaGUCGUGGGCGUCU--------------GUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 47607 0.67 0.941178
Target:  5'- --cUGCcCAGCGCCCccucgaGGACACACa -3'
miRNA:   3'- cuuGCGaGUCGUGGGcg----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 101598 0.67 0.941178
Target:  5'- -cGCGCUCAG-ACUCGguGGCgGCGCc -3'
miRNA:   3'- cuUGCGAGUCgUGGGCguCUG-UGUGc -5'
16088 3' -55.8 NC_004065.1 + 175560 0.67 0.915643
Target:  5'- -uGCGCgu-GCGCUCGCGGcagaccGCGCGCGa -3'
miRNA:   3'- cuUGCGaguCGUGGGCGUC------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 114489 0.67 0.940723
Target:  5'- aGACGCUCGccCGCCCGCAucacgguGACAgACa -3'
miRNA:   3'- cUUGCGAGUc-GUGGGCGU-------CUGUgUGc -5'
16088 3' -55.8 NC_004065.1 + 36167 0.67 0.941178
Target:  5'- cGGCGCugugUCAGcCGCUCGCggggGGGCGCGCa -3'
miRNA:   3'- cUUGCG----AGUC-GUGGGCG----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 165379 0.67 0.941178
Target:  5'- ---gGC-CAGCA-CgGCGGACGCGCGg -3'
miRNA:   3'- cuugCGaGUCGUgGgCGUCUGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.