miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 47607 0.67 0.941178
Target:  5'- --cUGCcCAGCGCCCccucgaGGACACACa -3'
miRNA:   3'- cuuGCGaGUCGUGGGcg----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 101598 0.67 0.941178
Target:  5'- -cGCGCUCAG-ACUCGguGGCgGCGCc -3'
miRNA:   3'- cuUGCGAGUCgUGGGCguCUG-UGUGc -5'
16088 3' -55.8 NC_004065.1 + 126230 0.67 0.924966
Target:  5'- aGAACgGCgCGGCGCUCGCGGAgaucaaccagcugcUGCGCGa -3'
miRNA:   3'- -CUUG-CGaGUCGUGGGCGUCU--------------GUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 36167 0.67 0.941178
Target:  5'- cGGCGCugugUCAGcCGCUCGCggggGGGCGCGCa -3'
miRNA:   3'- cUUGCG----AGUC-GUGGGCG----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 66987 0.67 0.931149
Target:  5'- -cGCGCaagccgugaccagUCGGCGCCCGUguacGGGCcccGCGCGg -3'
miRNA:   3'- cuUGCG-------------AGUCGUGGGCG----UCUG---UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 161690 0.67 0.93165
Target:  5'- cAGCuGCUgCAGCAgcuCCCGCAGcCACgACGa -3'
miRNA:   3'- cUUG-CGA-GUCGU---GGGCGUCuGUG-UGC- -5'
16088 3' -55.8 NC_004065.1 + 166467 0.67 0.926543
Target:  5'- -cACGgaCAGCACggGCGGugACACGu -3'
miRNA:   3'- cuUGCgaGUCGUGggCGUCugUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 27922 0.67 0.921207
Target:  5'- gGAACGCg-AGCGCCgccgacagagaCGCAGuGCGCACa -3'
miRNA:   3'- -CUUGCGagUCGUGG-----------GCGUC-UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 30882 0.67 0.921207
Target:  5'- ---gGUUCgAGCGCCCGCAGGgcgucgggguCGCACu -3'
miRNA:   3'- cuugCGAG-UCGUGGGCGUCU----------GUGUGc -5'
16088 3' -55.8 NC_004065.1 + 199703 0.67 0.920112
Target:  5'- -cACGCUCAGCaccgacucgacgcgaAaaggauccugcccgaCCCGCAGGCcCACGa -3'
miRNA:   3'- cuUGCGAGUCG---------------U---------------GGGCGUCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 54461 0.67 0.915643
Target:  5'- -cGCGCgCGGuCugCCGCGaGCGCACGc -3'
miRNA:   3'- cuUGCGaGUC-GugGGCGUcUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 25443 0.67 0.915074
Target:  5'- -uGCGC-CAGCgacuacaACCCagagaGCAGACGCGCa -3'
miRNA:   3'- cuUGCGaGUCG-------UGGG-----CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 29569 0.68 0.903833
Target:  5'- -cGCGCUCccgcuaucugacGGCGgCCGCGGugAcCGCGg -3'
miRNA:   3'- cuUGCGAG------------UCGUgGGCGUCugU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 120106 0.68 0.897591
Target:  5'- gGGACGCgaCGGCGgCCGCGG-CGgACGa -3'
miRNA:   3'- -CUUGCGa-GUCGUgGGCGUCuGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 88915 0.68 0.903833
Target:  5'- uGAGCGCgUCGGCGaugCCGCugaAGGCGCGgCGg -3'
miRNA:   3'- -CUUGCG-AGUCGUg--GGCG---UCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 117393 0.68 0.877552
Target:  5'- cGACGCUCGGCcgcGCgCGCuGGGCuCGCGg -3'
miRNA:   3'- cUUGCGAGUCG---UGgGCG-UCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 197798 0.68 0.884447
Target:  5'- -cGCGUUggucacCAGCGCCCGCGG-CGcCACGu -3'
miRNA:   3'- cuUGCGA------GUCGUGGGCGUCuGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 42873 0.68 0.897591
Target:  5'- gGGACGC-CAcGCACCUGUcgaaagAGACACAUc -3'
miRNA:   3'- -CUUGCGaGU-CGUGGGCG------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 68341 0.68 0.903833
Target:  5'- gGAGCuGCUgCAGCagcuGCCCGUGGAgaACACGa -3'
miRNA:   3'- -CUUG-CGA-GUCG----UGGGCGUCUg-UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 228971 0.68 0.903833
Target:  5'- gGAACGgaCAGCgAUCCGC-GACACgaACGg -3'
miRNA:   3'- -CUUGCgaGUCG-UGGGCGuCUGUG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.