miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 107321 1.08 0.005249
Target:  5'- aGAACGCUCAGCACCCGCAGACACACGc -3'
miRNA:   3'- -CUUGCGAGUCGUGGGCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 202187 0.78 0.374923
Target:  5'- uGAUGUUCaggcggccgAGCACCCGCAGGCACAuCGg -3'
miRNA:   3'- cUUGCGAG---------UCGUGGGCGUCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 88665 0.77 0.433637
Target:  5'- cGAGCGCcgcCAGCACCCGCGaGCGgACGa -3'
miRNA:   3'- -CUUGCGa--GUCGUGGGCGUcUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 61514 0.76 0.497353
Target:  5'- aGAACGCggcgaCAGCAuCCCGCAGGCGauCGCa -3'
miRNA:   3'- -CUUGCGa----GUCGU-GGGCGUCUGU--GUGc -5'
16088 3' -55.8 NC_004065.1 + 188351 0.74 0.574817
Target:  5'- cGAUGCUCAGC-CCCaGCgaggGGGCGCACGu -3'
miRNA:   3'- cUUGCGAGUCGuGGG-CG----UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 121561 0.74 0.594685
Target:  5'- aGGACGCagGGCGCCUGCGGACuCAg- -3'
miRNA:   3'- -CUUGCGagUCGUGGGCGUCUGuGUgc -5'
16088 3' -55.8 NC_004065.1 + 86516 0.74 0.598673
Target:  5'- aGGACGCUgcucaCAGCAuCCCGggcgaaguggggaucCAGACGCACGg -3'
miRNA:   3'- -CUUGCGA-----GUCGU-GGGC---------------GUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 159483 0.73 0.633679
Target:  5'- ---aGCUCGuucucucGCGCCUGCAGGCGCGCc -3'
miRNA:   3'- cuugCGAGU-------CGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 199033 0.73 0.63468
Target:  5'- aGugGCUCAGCGCCCGaCGcGGCgaGCGCa -3'
miRNA:   3'- cUugCGAGUCGUGGGC-GU-CUG--UGUGc -5'
16088 3' -55.8 NC_004065.1 + 59005 0.73 0.674641
Target:  5'- uGACGUUCAGUGuCCCGUGGGCAgACa -3'
miRNA:   3'- cUUGCGAGUCGU-GGGCGUCUGUgUGc -5'
16088 3' -55.8 NC_004065.1 + 59707 0.72 0.704289
Target:  5'- aGGGCGCcgAGCGgCCGCGG-CGCACGg -3'
miRNA:   3'- -CUUGCGagUCGUgGGCGUCuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 142824 0.72 0.714067
Target:  5'- --cCGCUUcaAGUACCUGCGGuCGCGCGa -3'
miRNA:   3'- cuuGCGAG--UCGUGGGCGUCuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 125188 0.72 0.723777
Target:  5'- cGAACGC-CAGCAggcCCCGCuGACGC-Ca -3'
miRNA:   3'- -CUUGCGaGUCGU---GGGCGuCUGUGuGc -5'
16088 3' -55.8 NC_004065.1 + 98641 0.72 0.733412
Target:  5'- -uGCGCUCGGuCGCUCGUAcGuACGCGCGg -3'
miRNA:   3'- cuUGCGAGUC-GUGGGCGU-C-UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 102396 0.72 0.733412
Target:  5'- aGAACaCUCAGCGCCuCGUcGACGgACGg -3'
miRNA:   3'- -CUUGcGAGUCGUGG-GCGuCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 31385 0.71 0.742963
Target:  5'- -cACGCU--GCACCUGguGGCGCGCa -3'
miRNA:   3'- cuUGCGAguCGUGGGCguCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 186917 0.71 0.761778
Target:  5'- cGAGCGCggaUCGGCGCCggguCGCGGAUGCcCGg -3'
miRNA:   3'- -CUUGCG---AGUCGUGG----GCGUCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 150364 0.71 0.768263
Target:  5'- -cACGUUCGGCACCucccgggucaucagCGCcGACACGCa -3'
miRNA:   3'- cuUGCGAGUCGUGG--------------GCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 124957 0.71 0.779246
Target:  5'- -uGCGCggCAGCGCCUGCAcgaagggcggccaGAgGCGCGg -3'
miRNA:   3'- cuUGCGa-GUCGUGGGCGU-------------CUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 89310 0.71 0.780153
Target:  5'- cGAGCGCggCAGCGaguUCUGCAGgACGCGCu -3'
miRNA:   3'- -CUUGCGa-GUCGU---GGGCGUC-UGUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.