miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 210020 0.71 0.780153
Target:  5'- cAGCGUcagcaaCAGCAgUCGCGGACGCACa -3'
miRNA:   3'- cUUGCGa-----GUCGUgGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 152216 0.7 0.789154
Target:  5'- -uGCGCUCccgcAGCugCUGCAGGaACACGu -3'
miRNA:   3'- cuUGCGAG----UCGugGGCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 60153 0.7 0.789154
Target:  5'- gGAACGgaUCGGCGCCCGCcauGCACAgGu -3'
miRNA:   3'- -CUUGCg-AGUCGUGGGCGuc-UGUGUgC- -5'
16088 3' -55.8 NC_004065.1 + 205530 0.7 0.806742
Target:  5'- cGGCGCUCAGgGCCgGCGGcggugccaucuACGCGCc -3'
miRNA:   3'- cUUGCGAGUCgUGGgCGUC-----------UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 55772 0.7 0.806742
Target:  5'- aGAugGCggucUCGGCGCCgaGCAGGCGauCGCGg -3'
miRNA:   3'- -CUugCG----AGUCGUGGg-CGUCUGU--GUGC- -5'
16088 3' -55.8 NC_004065.1 + 70501 0.7 0.812758
Target:  5'- uGAAgGCgauggCGGCGCCCuucucgacggagcuGCAGGCGCGCc -3'
miRNA:   3'- -CUUgCGa----GUCGUGGG--------------CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 128445 0.7 0.815312
Target:  5'- uGAGCGCggcggaGGCGUCCGCGGGCGCGa- -3'
miRNA:   3'- -CUUGCGag----UCGUGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 84254 0.7 0.815312
Target:  5'- --gUGCg-AGCGCCCGCGaccGGCGCGCGa -3'
miRNA:   3'- cuuGCGagUCGUGGGCGU---CUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 97405 0.7 0.823724
Target:  5'- -cACGCagAGCAUCCGCGGGCAgaACu -3'
miRNA:   3'- cuUGCGagUCGUGGGCGUCUGUg-UGc -5'
16088 3' -55.8 NC_004065.1 + 229255 0.7 0.831968
Target:  5'- gGAACGCUCgaaggucgAGCgcgaACCCGCGacgcGGCACGCu -3'
miRNA:   3'- -CUUGCGAG--------UCG----UGGGCGU----CUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 121376 0.7 0.831968
Target:  5'- cGGGCGC-CAGCGgCaCGCAGA-ACACGa -3'
miRNA:   3'- -CUUGCGaGUCGUgG-GCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 144319 0.69 0.840039
Target:  5'- aGGCGUUCAGCGCCUcguaGCGGAUgaugggguACAUGg -3'
miRNA:   3'- cUUGCGAGUCGUGGG----CGUCUG--------UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 125921 0.69 0.840039
Target:  5'- --cCGCUCGGCACgUGCAGGCcgAC-CGg -3'
miRNA:   3'- cuuGCGAGUCGUGgGCGUCUG--UGuGC- -5'
16088 3' -55.8 NC_004065.1 + 137992 0.69 0.843217
Target:  5'- cGAGCGCgccaAGaGCCCGCGGuccucugcgauugcgGCGCACGg -3'
miRNA:   3'- -CUUGCGag--UCgUGGGCGUC---------------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 187929 0.69 0.847928
Target:  5'- -cACGUacgUCGGCGCCgGC-GACGCGCa -3'
miRNA:   3'- cuUGCG---AGUCGUGGgCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 165650 0.69 0.847928
Target:  5'- --cUGCUCGGacagaGCCUGCGGACGCGa- -3'
miRNA:   3'- cuuGCGAGUCg----UGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 103143 0.69 0.85563
Target:  5'- aGGCGUUCAGCACgCGUAG-CAC-CGc -3'
miRNA:   3'- cUUGCGAGUCGUGgGCGUCuGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 1019 0.69 0.85563
Target:  5'- cGAGCGU---GC-CCCGCAGGCAgGCGc -3'
miRNA:   3'- -CUUGCGaguCGuGGGCGUCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 108543 0.69 0.863139
Target:  5'- --uCGCcaccuUCA-CGCCCGCGGACGCGCc -3'
miRNA:   3'- cuuGCG-----AGUcGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 161227 0.69 0.863139
Target:  5'- --uCGCgCAGCGCCCGCAcguucuccGACACGg- -3'
miRNA:   3'- cuuGCGaGUCGUGGGCGU--------CUGUGUgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.