miRNA display CGI


Results 41 - 60 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 138535 0.69 0.870448
Target:  5'- uGGCGCUCgaacgcggcacgAGCGgCgGCGGACugACGg -3'
miRNA:   3'- cUUGCGAG------------UCGUgGgCGUCUGugUGC- -5'
16088 3' -55.8 NC_004065.1 + 135877 0.69 0.870448
Target:  5'- cGAUGUgaUCuGGUACgCGCAGGCACGCGu -3'
miRNA:   3'- cUUGCG--AG-UCGUGgGCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 63847 0.69 0.870448
Target:  5'- uGGAUGCUCAGaCACaUCGCGGuGCAgACGu -3'
miRNA:   3'- -CUUGCGAGUC-GUG-GGCGUC-UGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 117393 0.68 0.877552
Target:  5'- cGACGCUCGGCcgcGCgCGCuGGGCuCGCGg -3'
miRNA:   3'- cUUGCGAGUCG---UGgGCG-UCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 197798 0.68 0.884447
Target:  5'- -cGCGUUggucacCAGCGCCCGCGG-CGcCACGu -3'
miRNA:   3'- cuUGCGA------GUCGUGGGCGUCuGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 81206 0.68 0.891128
Target:  5'- cAACGCgCAGUACCgCGCGGACu--CGg -3'
miRNA:   3'- cUUGCGaGUCGUGG-GCGUCUGuguGC- -5'
16088 3' -55.8 NC_004065.1 + 191268 0.68 0.897591
Target:  5'- uGugGaaaCGGUACUCGCGGGCACGCc -3'
miRNA:   3'- cUugCga-GUCGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 120106 0.68 0.897591
Target:  5'- gGGACGCgaCGGCGgCCGCGG-CGgACGa -3'
miRNA:   3'- -CUUGCGa-GUCGUgGGCGUCuGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 42873 0.68 0.897591
Target:  5'- gGGACGC-CAcGCACCUGUcgaaagAGACACAUc -3'
miRNA:   3'- -CUUGCGaGU-CGUGGGCG------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 88915 0.68 0.903833
Target:  5'- uGAGCGCgUCGGCGaugCCGCugaAGGCGCGgCGg -3'
miRNA:   3'- -CUUGCG-AGUCGUg--GGCG---UCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 29498 0.68 0.903833
Target:  5'- aGGCGUUCcaGGUACUCGguGACGC-CGg -3'
miRNA:   3'- cUUGCGAG--UCGUGGGCguCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 68341 0.68 0.903833
Target:  5'- gGAGCuGCUgCAGCagcuGCCCGUGGAgaACACGa -3'
miRNA:   3'- -CUUG-CGA-GUCG----UGGGCGUCUg-UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 228971 0.68 0.903833
Target:  5'- gGAACGgaCAGCgAUCCGC-GACACgaACGg -3'
miRNA:   3'- -CUUGCgaGUCG-UGGGCGuCUGUG--UGC- -5'
16088 3' -55.8 NC_004065.1 + 139664 0.68 0.903833
Target:  5'- cGGCGCgugCGGCGgCCGCugcuGuCACACGu -3'
miRNA:   3'- cUUGCGa--GUCGUgGGCGu---CuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 29569 0.68 0.903833
Target:  5'- -cGCGCUCccgcuaucugacGGCGgCCGCGGugAcCGCGg -3'
miRNA:   3'- cuUGCGAG------------UCGUgGGCGUCugU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 61287 0.68 0.906267
Target:  5'- cGAACGCcaauucuucagacgCAGCGCCCGaaaAGA-GCACGa -3'
miRNA:   3'- -CUUGCGa-------------GUCGUGGGCg--UCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 101553 0.68 0.908069
Target:  5'- cGGCGCUggCAgugguagccugaucGCGCCCGCGGACGC-Cu -3'
miRNA:   3'- cUUGCGA--GU--------------CGUGGGCGUCUGUGuGc -5'
16088 3' -55.8 NC_004065.1 + 161579 0.68 0.90985
Target:  5'- ---gGCUCuuCACCugcgaguugCGCAGGCACACGa -3'
miRNA:   3'- cuugCGAGucGUGG---------GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 25443 0.67 0.915074
Target:  5'- -uGCGC-CAGCgacuacaACCCagagaGCAGACGCGCa -3'
miRNA:   3'- cuUGCGaGUCG-------UGGG-----CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 54461 0.67 0.915643
Target:  5'- -cGCGCgCGGuCugCCGCGaGCGCACGc -3'
miRNA:   3'- cuUGCGaGUC-GugGGCGUcUGUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.