miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 38789 0.66 0.949802
Target:  5'- uGACGgUCuGGCGCCCGCAGAgcccCAUcCGc -3'
miRNA:   3'- cUUGCgAG-UCGUGGGCGUCU----GUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 155305 0.66 0.949802
Target:  5'- cGAACGCUa--CugUCGCAGGCGCccGCGc -3'
miRNA:   3'- -CUUGCGAgucGugGGCGUCUGUG--UGC- -5'
16088 3' -55.8 NC_004065.1 + 73509 0.66 0.948565
Target:  5'- cGGugGCUUuuuuagcgaucgagAGCAUCCGCAGAagguccaGCugGu -3'
miRNA:   3'- -CUugCGAG--------------UCGUGGGCGUCUg------UGugC- -5'
16088 3' -55.8 NC_004065.1 + 120906 0.66 0.947309
Target:  5'- cGGCGa-CAGCACCCGCaguccguacuugugcGGcguGCACACGg -3'
miRNA:   3'- cUUGCgaGUCGUGGGCG---------------UC---UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 83163 0.66 0.945602
Target:  5'- -cGCGUUCAcGCGCCgaUGCAGACcagGCGCu -3'
miRNA:   3'- cuUGCGAGU-CGUGG--GCGUCUG---UGUGc -5'
16088 3' -55.8 NC_004065.1 + 43125 0.66 0.945602
Target:  5'- -cGCGCUC-GCGaagaCCGCcggccgcggaAGACACGCGc -3'
miRNA:   3'- cuUGCGAGuCGUg---GGCG----------UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 80322 0.66 0.94517
Target:  5'- cGGCGCggccgCGGCcccccggcguucgACCUGCAGACccuggACACGg -3'
miRNA:   3'- cUUGCGa----GUCG-------------UGGGCGUCUG-----UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 187351 0.66 0.94517
Target:  5'- cGAACGCgagcagcuucgcgUCAGCGuCCCgaucuuugccaGCuGGCGCGCGg -3'
miRNA:   3'- -CUUGCG-------------AGUCGU-GGG-----------CGuCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 69686 0.67 0.941178
Target:  5'- aGACGgaCAuCGacucCCCGCAGACGCugGa -3'
miRNA:   3'- cUUGCgaGUcGU----GGGCGUCUGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 124112 0.67 0.941178
Target:  5'- ---gGCUCAGCGCCgCGaucGACAC-CGg -3'
miRNA:   3'- cuugCGAGUCGUGG-GCgu-CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 165379 0.67 0.941178
Target:  5'- ---gGC-CAGCA-CgGCGGACGCGCGg -3'
miRNA:   3'- cuugCGaGUCGUgGgCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 41509 0.67 0.941178
Target:  5'- gGAGCGCgcgggCGGU-CCCGCcAGAguCGCGg -3'
miRNA:   3'- -CUUGCGa----GUCGuGGGCG-UCUguGUGC- -5'
16088 3' -55.8 NC_004065.1 + 101598 0.67 0.941178
Target:  5'- -cGCGCUCAG-ACUCGguGGCgGCGCc -3'
miRNA:   3'- cuUGCGAGUCgUGGGCguCUG-UGUGc -5'
16088 3' -55.8 NC_004065.1 + 47607 0.67 0.941178
Target:  5'- --cUGCcCAGCGCCCccucgaGGACACACa -3'
miRNA:   3'- cuuGCGaGUCGUGGGcg----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 36167 0.67 0.941178
Target:  5'- cGGCGCugugUCAGcCGCUCGCggggGGGCGCGCa -3'
miRNA:   3'- cUUGCG----AGUC-GUGGGCG----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 114489 0.67 0.940723
Target:  5'- aGACGCUCGccCGCCCGCAucacgguGACAgACa -3'
miRNA:   3'- cUUGCGAGUc-GUGGGCGU-------CUGUgUGc -5'
16088 3' -55.8 NC_004065.1 + 113126 0.67 0.936528
Target:  5'- cAGCaGCUCGaucccGCGCCCcagcgucaGCAGGCACGCc -3'
miRNA:   3'- cUUG-CGAGU-----CGUGGG--------CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 227932 0.67 0.93165
Target:  5'- -cACGCUCGGCAUaCGCGcGCAgCGCGu -3'
miRNA:   3'- cuUGCGAGUCGUGgGCGUcUGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 161690 0.67 0.93165
Target:  5'- cAGCuGCUgCAGCAgcuCCCGCAGcCACgACGa -3'
miRNA:   3'- cUUG-CGA-GUCGU---GGGCGUCuGUG-UGC- -5'
16088 3' -55.8 NC_004065.1 + 124435 0.67 0.93165
Target:  5'- aGGACGUgcugCAGCgacucgaaGCCCGCcGACgGCGCGc -3'
miRNA:   3'- -CUUGCGa---GUCG--------UGGGCGuCUG-UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.