Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16088 | 3' | -55.8 | NC_004065.1 | + | 227932 | 0.67 | 0.93165 |
Target: 5'- -cACGCUCGGCAUaCGCGcGCAgCGCGu -3' miRNA: 3'- cuUGCGAGUCGUGgGCGUcUGU-GUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 66987 | 0.67 | 0.931149 |
Target: 5'- -cGCGCaagccgugaccagUCGGCGCCCGUguacGGGCcccGCGCGg -3' miRNA: 3'- cuUGCG-------------AGUCGUGGGCG----UCUG---UGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 166467 | 0.67 | 0.926543 |
Target: 5'- -cACGgaCAGCACggGCGGugACACGu -3' miRNA: 3'- cuUGCgaGUCGUGggCGUCugUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 126230 | 0.67 | 0.924966 |
Target: 5'- aGAACgGCgCGGCGCUCGCGGAgaucaaccagcugcUGCGCGa -3' miRNA: 3'- -CUUG-CGaGUCGUGGGCGUCU--------------GUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 84717 | 0.67 | 0.921207 |
Target: 5'- --uCGCUCGGCACCCGaagcGGCG-ACGu -3' miRNA: 3'- cuuGCGAGUCGUGGGCgu--CUGUgUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 27922 | 0.67 | 0.921207 |
Target: 5'- gGAACGCg-AGCGCCgccgacagagaCGCAGuGCGCACa -3' miRNA: 3'- -CUUGCGagUCGUGG-----------GCGUC-UGUGUGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 30882 | 0.67 | 0.921207 |
Target: 5'- ---gGUUCgAGCGCCCGCAGGgcgucgggguCGCACu -3' miRNA: 3'- cuugCGAG-UCGUGGGCGUCU----------GUGUGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 199703 | 0.67 | 0.920112 |
Target: 5'- -cACGCUCAGCaccgacucgacgcgaAaaggauccugcccgaCCCGCAGGCcCACGa -3' miRNA: 3'- cuUGCGAGUCG---------------U---------------GGGCGUCUGuGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 104248 | 0.67 | 0.915643 |
Target: 5'- aGGCGCUCAagacucucuGCcacCCCGC-GAUACACGa -3' miRNA: 3'- cUUGCGAGU---------CGu--GGGCGuCUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 54461 | 0.67 | 0.915643 |
Target: 5'- -cGCGCgCGGuCugCCGCGaGCGCACGc -3' miRNA: 3'- cuUGCGaGUC-GugGGCGUcUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 175560 | 0.67 | 0.915643 |
Target: 5'- -uGCGCgu-GCGCUCGCGGcagaccGCGCGCGa -3' miRNA: 3'- cuUGCGaguCGUGGGCGUC------UGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 25443 | 0.67 | 0.915074 |
Target: 5'- -uGCGC-CAGCgacuacaACCCagagaGCAGACGCGCa -3' miRNA: 3'- cuUGCGaGUCG-------UGGG-----CGUCUGUGUGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 161579 | 0.68 | 0.90985 |
Target: 5'- ---gGCUCuuCACCugcgaguugCGCAGGCACACGa -3' miRNA: 3'- cuugCGAGucGUGG---------GCGUCUGUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 101553 | 0.68 | 0.908069 |
Target: 5'- cGGCGCUggCAgugguagccugaucGCGCCCGCGGACGC-Cu -3' miRNA: 3'- cUUGCGA--GU--------------CGUGGGCGUCUGUGuGc -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 61287 | 0.68 | 0.906267 |
Target: 5'- cGAACGCcaauucuucagacgCAGCGCCCGaaaAGA-GCACGa -3' miRNA: 3'- -CUUGCGa-------------GUCGUGGGCg--UCUgUGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 68341 | 0.68 | 0.903833 |
Target: 5'- gGAGCuGCUgCAGCagcuGCCCGUGGAgaACACGa -3' miRNA: 3'- -CUUG-CGA-GUCG----UGGGCGUCUg-UGUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 88915 | 0.68 | 0.903833 |
Target: 5'- uGAGCGCgUCGGCGaugCCGCugaAGGCGCGgCGg -3' miRNA: 3'- -CUUGCG-AGUCGUg--GGCG---UCUGUGU-GC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 29569 | 0.68 | 0.903833 |
Target: 5'- -cGCGCUCccgcuaucugacGGCGgCCGCGGugAcCGCGg -3' miRNA: 3'- cuUGCGAG------------UCGUgGGCGUCugU-GUGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 228971 | 0.68 | 0.903833 |
Target: 5'- gGAACGgaCAGCgAUCCGC-GACACgaACGg -3' miRNA: 3'- -CUUGCgaGUCG-UGGGCGuCUGUG--UGC- -5' |
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16088 | 3' | -55.8 | NC_004065.1 | + | 139664 | 0.68 | 0.903833 |
Target: 5'- cGGCGCgugCGGCGgCCGCugcuGuCACACGu -3' miRNA: 3'- cUUGCGa--GUCGUgGGCGu---CuGUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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