miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 228971 0.68 0.903833
Target:  5'- gGAACGgaCAGCgAUCCGC-GACACgaACGg -3'
miRNA:   3'- -CUUGCgaGUCG-UGGGCGuCUGUG--UGC- -5'
16088 3' -55.8 NC_004065.1 + 42873 0.68 0.897591
Target:  5'- gGGACGC-CAcGCACCUGUcgaaagAGACACAUc -3'
miRNA:   3'- -CUUGCGaGU-CGUGGGCG------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 191268 0.68 0.897591
Target:  5'- uGugGaaaCGGUACUCGCGGGCACGCc -3'
miRNA:   3'- cUugCga-GUCGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 120106 0.68 0.897591
Target:  5'- gGGACGCgaCGGCGgCCGCGG-CGgACGa -3'
miRNA:   3'- -CUUGCGa-GUCGUgGGCGUCuGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 81206 0.68 0.891128
Target:  5'- cAACGCgCAGUACCgCGCGGACu--CGg -3'
miRNA:   3'- cUUGCGaGUCGUGG-GCGUCUGuguGC- -5'
16088 3' -55.8 NC_004065.1 + 197798 0.68 0.884447
Target:  5'- -cGCGUUggucacCAGCGCCCGCGG-CGcCACGu -3'
miRNA:   3'- cuUGCGA------GUCGUGGGCGUCuGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 117393 0.68 0.877552
Target:  5'- cGACGCUCGGCcgcGCgCGCuGGGCuCGCGg -3'
miRNA:   3'- cUUGCGAGUCG---UGgGCG-UCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 63847 0.69 0.870448
Target:  5'- uGGAUGCUCAGaCACaUCGCGGuGCAgACGu -3'
miRNA:   3'- -CUUGCGAGUC-GUG-GGCGUC-UGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 138535 0.69 0.870448
Target:  5'- uGGCGCUCgaacgcggcacgAGCGgCgGCGGACugACGg -3'
miRNA:   3'- cUUGCGAG------------UCGUgGgCGUCUGugUGC- -5'
16088 3' -55.8 NC_004065.1 + 135877 0.69 0.870448
Target:  5'- cGAUGUgaUCuGGUACgCGCAGGCACGCGu -3'
miRNA:   3'- cUUGCG--AG-UCGUGgGCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 161227 0.69 0.863139
Target:  5'- --uCGCgCAGCGCCCGCAcguucuccGACACGg- -3'
miRNA:   3'- cuuGCGaGUCGUGGGCGU--------CUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 108543 0.69 0.863139
Target:  5'- --uCGCcaccuUCA-CGCCCGCGGACGCGCc -3'
miRNA:   3'- cuuGCG-----AGUcGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 103143 0.69 0.85563
Target:  5'- aGGCGUUCAGCACgCGUAG-CAC-CGc -3'
miRNA:   3'- cUUGCGAGUCGUGgGCGUCuGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 1019 0.69 0.85563
Target:  5'- cGAGCGU---GC-CCCGCAGGCAgGCGc -3'
miRNA:   3'- -CUUGCGaguCGuGGGCGUCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 165650 0.69 0.847928
Target:  5'- --cUGCUCGGacagaGCCUGCGGACGCGa- -3'
miRNA:   3'- cuuGCGAGUCg----UGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 187929 0.69 0.847928
Target:  5'- -cACGUacgUCGGCGCCgGC-GACGCGCa -3'
miRNA:   3'- cuUGCG---AGUCGUGGgCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 137992 0.69 0.843217
Target:  5'- cGAGCGCgccaAGaGCCCGCGGuccucugcgauugcgGCGCACGg -3'
miRNA:   3'- -CUUGCGag--UCgUGGGCGUC---------------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 125921 0.69 0.840039
Target:  5'- --cCGCUCGGCACgUGCAGGCcgAC-CGg -3'
miRNA:   3'- cuuGCGAGUCGUGgGCGUCUG--UGuGC- -5'
16088 3' -55.8 NC_004065.1 + 144319 0.69 0.840039
Target:  5'- aGGCGUUCAGCGCCUcguaGCGGAUgaugggguACAUGg -3'
miRNA:   3'- cUUGCGAGUCGUGGG----CGUCUG--------UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 121376 0.7 0.831968
Target:  5'- cGGGCGC-CAGCGgCaCGCAGA-ACACGa -3'
miRNA:   3'- -CUUGCGaGUCGUgG-GCGUCUgUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.