miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 1019 0.69 0.85563
Target:  5'- cGAGCGU---GC-CCCGCAGGCAgGCGc -3'
miRNA:   3'- -CUUGCGaguCGuGGGCGUCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 23189 0.66 0.961084
Target:  5'- uGAuCGCcuuUCGGCugguguaucugACCgUGCAGGCGCACGg -3'
miRNA:   3'- -CUuGCG---AGUCG-----------UGG-GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 25443 0.67 0.915074
Target:  5'- -uGCGC-CAGCgacuacaACCCagagaGCAGACGCGCa -3'
miRNA:   3'- cuUGCGaGUCG-------UGGG-----CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 27922 0.67 0.921207
Target:  5'- gGAACGCg-AGCGCCgccgacagagaCGCAGuGCGCACa -3'
miRNA:   3'- -CUUGCGagUCGUGG-----------GCGUC-UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 29498 0.68 0.903833
Target:  5'- aGGCGUUCcaGGUACUCGguGACGC-CGg -3'
miRNA:   3'- cUUGCGAG--UCGUGGGCguCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 29569 0.68 0.903833
Target:  5'- -cGCGCUCccgcuaucugacGGCGgCCGCGGugAcCGCGg -3'
miRNA:   3'- cuUGCGAG------------UCGUgGGCGUCugU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 29996 0.66 0.961084
Target:  5'- -uACGCggaaCGGCACCUGCcccuGACGacCGCGg -3'
miRNA:   3'- cuUGCGa---GUCGUGGGCGu---CUGU--GUGC- -5'
16088 3' -55.8 NC_004065.1 + 30882 0.67 0.921207
Target:  5'- ---gGUUCgAGCGCCCGCAGGgcgucgggguCGCACu -3'
miRNA:   3'- cuugCGAG-UCGUGGGCGUCU----------GUGUGc -5'
16088 3' -55.8 NC_004065.1 + 31385 0.71 0.742963
Target:  5'- -cACGCU--GCACCUGguGGCGCGCa -3'
miRNA:   3'- cuUGCGAguCGUGGGCguCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 36167 0.67 0.941178
Target:  5'- cGGCGCugugUCAGcCGCUCGCggggGGGCGCGCa -3'
miRNA:   3'- cUUGCG----AGUC-GUGGGCG----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 38789 0.66 0.949802
Target:  5'- uGACGgUCuGGCGCCCGCAGAgcccCAUcCGc -3'
miRNA:   3'- cUUGCgAG-UCGUGGGCGUCU----GUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 41509 0.67 0.941178
Target:  5'- gGAGCGCgcgggCGGU-CCCGCcAGAguCGCGg -3'
miRNA:   3'- -CUUGCGa----GUCGuGGGCG-UCUguGUGC- -5'
16088 3' -55.8 NC_004065.1 + 42873 0.68 0.897591
Target:  5'- gGGACGC-CAcGCACCUGUcgaaagAGACACAUc -3'
miRNA:   3'- -CUUGCGaGU-CGUGGGCG------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 43125 0.66 0.945602
Target:  5'- -cGCGCUC-GCGaagaCCGCcggccgcggaAGACACGCGc -3'
miRNA:   3'- cuUGCGAGuCGUg---GGCG----------UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 47607 0.67 0.941178
Target:  5'- --cUGCcCAGCGCCCccucgaGGACACACa -3'
miRNA:   3'- cuuGCGaGUCGUGGGcg----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 50454 0.66 0.957539
Target:  5'- uGGCGCcccuUCAGCGCCCaGCAcGAUGCuCGu -3'
miRNA:   3'- cUUGCG----AGUCGUGGG-CGU-CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 53908 0.66 0.957539
Target:  5'- cGACGCgaggAGCGCCCGUcaGGAUAC-CGc -3'
miRNA:   3'- cUUGCGag--UCGUGGGCG--UCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 54461 0.67 0.915643
Target:  5'- -cGCGCgCGGuCugCCGCGaGCGCACGc -3'
miRNA:   3'- cuUGCGaGUC-GugGGCGUcUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 55772 0.7 0.806742
Target:  5'- aGAugGCggucUCGGCGCCgaGCAGGCGauCGCGg -3'
miRNA:   3'- -CUugCG----AGUCGUGGg-CGUCUGU--GUGC- -5'
16088 3' -55.8 NC_004065.1 + 59005 0.73 0.674641
Target:  5'- uGACGUUCAGUGuCCCGUGGGCAgACa -3'
miRNA:   3'- cUUGCGAGUCGU-GGGCGUCUGUgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.