miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 59707 0.72 0.704289
Target:  5'- aGGGCGCcgAGCGgCCGCGG-CGCACGg -3'
miRNA:   3'- -CUUGCGagUCGUgGGCGUCuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 60153 0.7 0.789154
Target:  5'- gGAACGgaUCGGCGCCCGCcauGCACAgGu -3'
miRNA:   3'- -CUUGCg-AGUCGUGGGCGuc-UGUGUgC- -5'
16088 3' -55.8 NC_004065.1 + 61287 0.68 0.906267
Target:  5'- cGAACGCcaauucuucagacgCAGCGCCCGaaaAGA-GCACGa -3'
miRNA:   3'- -CUUGCGa-------------GUCGUGGGCg--UCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 61514 0.76 0.497353
Target:  5'- aGAACGCggcgaCAGCAuCCCGCAGGCGauCGCa -3'
miRNA:   3'- -CUUGCGa----GUCGU-GGGCGUCUGU--GUGc -5'
16088 3' -55.8 NC_004065.1 + 63847 0.69 0.870448
Target:  5'- uGGAUGCUCAGaCACaUCGCGGuGCAgACGu -3'
miRNA:   3'- -CUUGCGAGUC-GUG-GGCGUC-UGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 66987 0.67 0.931149
Target:  5'- -cGCGCaagccgugaccagUCGGCGCCCGUguacGGGCcccGCGCGg -3'
miRNA:   3'- cuUGCG-------------AGUCGUGGGCG----UCUG---UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 68341 0.68 0.903833
Target:  5'- gGAGCuGCUgCAGCagcuGCCCGUGGAgaACACGa -3'
miRNA:   3'- -CUUG-CGA-GUCG----UGGGCGUCUg-UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 69686 0.67 0.941178
Target:  5'- aGACGgaCAuCGacucCCCGCAGACGCugGa -3'
miRNA:   3'- cUUGCgaGUcGU----GGGCGUCUGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 70501 0.7 0.812758
Target:  5'- uGAAgGCgauggCGGCGCCCuucucgacggagcuGCAGGCGCGCc -3'
miRNA:   3'- -CUUgCGa----GUCGUGGG--------------CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 73509 0.66 0.948565
Target:  5'- cGGugGCUUuuuuagcgaucgagAGCAUCCGCAGAagguccaGCugGu -3'
miRNA:   3'- -CUugCGAG--------------UCGUGGGCGUCUg------UGugC- -5'
16088 3' -55.8 NC_004065.1 + 77369 0.66 0.960739
Target:  5'- cAGCGCgacgAGCACCCGguGAugguggagaacauCACGCu -3'
miRNA:   3'- cUUGCGag--UCGUGGGCguCU-------------GUGUGc -5'
16088 3' -55.8 NC_004065.1 + 80322 0.66 0.94517
Target:  5'- cGGCGCggccgCGGCcccccggcguucgACCUGCAGACccuggACACGg -3'
miRNA:   3'- cUUGCGa----GUCG-------------UGGGCGUCUG-----UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 81206 0.68 0.891128
Target:  5'- cAACGCgCAGUACCgCGCGGACu--CGg -3'
miRNA:   3'- cUUGCGaGUCGUGG-GCGUCUGuguGC- -5'
16088 3' -55.8 NC_004065.1 + 83163 0.66 0.945602
Target:  5'- -cGCGUUCAcGCGCCgaUGCAGACcagGCGCu -3'
miRNA:   3'- cuUGCGAGU-CGUGG--GCGUCUG---UGUGc -5'
16088 3' -55.8 NC_004065.1 + 84254 0.7 0.815312
Target:  5'- --gUGCg-AGCGCCCGCGaccGGCGCGCGa -3'
miRNA:   3'- cuuGCGagUCGUGGGCGU---CUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 84717 0.67 0.921207
Target:  5'- --uCGCUCGGCACCCGaagcGGCG-ACGu -3'
miRNA:   3'- cuuGCGAGUCGUGGGCgu--CUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 86516 0.74 0.598673
Target:  5'- aGGACGCUgcucaCAGCAuCCCGggcgaaguggggaucCAGACGCACGg -3'
miRNA:   3'- -CUUGCGA-----GUCGU-GGGC---------------GUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 88665 0.77 0.433637
Target:  5'- cGAGCGCcgcCAGCACCCGCGaGCGgACGa -3'
miRNA:   3'- -CUUGCGa--GUCGUGGGCGUcUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 88915 0.68 0.903833
Target:  5'- uGAGCGCgUCGGCGaugCCGCugaAGGCGCGgCGg -3'
miRNA:   3'- -CUUGCG-AGUCGUg--GGCG---UCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 89310 0.71 0.780153
Target:  5'- cGAGCGCggCAGCGaguUCUGCAGgACGCGCu -3'
miRNA:   3'- -CUUGCGa-GUCGU---GGGCGUC-UGUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.