miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 97405 0.7 0.823724
Target:  5'- -cACGCagAGCAUCCGCGGGCAgaACu -3'
miRNA:   3'- cuUGCGagUCGUGGGCGUCUGUg-UGc -5'
16088 3' -55.8 NC_004065.1 + 98641 0.72 0.733412
Target:  5'- -uGCGCUCGGuCGCUCGUAcGuACGCGCGg -3'
miRNA:   3'- cuUGCGAGUC-GUGGGCGU-C-UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 101553 0.68 0.908069
Target:  5'- cGGCGCUggCAgugguagccugaucGCGCCCGCGGACGC-Cu -3'
miRNA:   3'- cUUGCGA--GU--------------CGUGGGCGUCUGUGuGc -5'
16088 3' -55.8 NC_004065.1 + 101598 0.67 0.941178
Target:  5'- -cGCGCUCAG-ACUCGguGGCgGCGCc -3'
miRNA:   3'- cuUGCGAGUCgUGGGCguCUG-UGUGc -5'
16088 3' -55.8 NC_004065.1 + 102396 0.72 0.733412
Target:  5'- aGAACaCUCAGCGCCuCGUcGACGgACGg -3'
miRNA:   3'- -CUUGcGAGUCGUGG-GCGuCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 102422 0.66 0.95378
Target:  5'- aGAGCGCcggUCccgAGCAgCgGUAGGCGCACu -3'
miRNA:   3'- -CUUGCG---AG---UCGUgGgCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 103143 0.69 0.85563
Target:  5'- aGGCGUUCAGCACgCGUAG-CAC-CGc -3'
miRNA:   3'- cUUGCGAGUCGUGgGCGUCuGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 104248 0.67 0.915643
Target:  5'- aGGCGCUCAagacucucuGCcacCCCGC-GAUACACGa -3'
miRNA:   3'- cUUGCGAGU---------CGu--GGGCGuCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 105490 0.66 0.949802
Target:  5'- gGAGCuGUUC--CACCUGguGGCGCACGu -3'
miRNA:   3'- -CUUG-CGAGucGUGGGCguCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 107321 1.08 0.005249
Target:  5'- aGAACGCUCAGCACCCGCAGACACACGc -3'
miRNA:   3'- -CUUGCGAGUCGUGGGCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 108543 0.69 0.863139
Target:  5'- --uCGCcaccuUCA-CGCCCGCGGACGCGCc -3'
miRNA:   3'- cuuGCG-----AGUcGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 113126 0.67 0.936528
Target:  5'- cAGCaGCUCGaucccGCGCCCcagcgucaGCAGGCACGCc -3'
miRNA:   3'- cUUG-CGAGU-----CGUGGG--------CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 114489 0.67 0.940723
Target:  5'- aGACGCUCGccCGCCCGCAucacgguGACAgACa -3'
miRNA:   3'- cUUGCGAGUc-GUGGGCGU-------CUGUgUGc -5'
16088 3' -55.8 NC_004065.1 + 117393 0.68 0.877552
Target:  5'- cGACGCUCGGCcgcGCgCGCuGGGCuCGCGg -3'
miRNA:   3'- cUUGCGAGUCG---UGgGCG-UCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 120106 0.68 0.897591
Target:  5'- gGGACGCgaCGGCGgCCGCGG-CGgACGa -3'
miRNA:   3'- -CUUGCGa-GUCGUgGGCGUCuGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 120906 0.66 0.947309
Target:  5'- cGGCGa-CAGCACCCGCaguccguacuugugcGGcguGCACACGg -3'
miRNA:   3'- cUUGCgaGUCGUGGGCG---------------UC---UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 121376 0.7 0.831968
Target:  5'- cGGGCGC-CAGCGgCaCGCAGA-ACACGa -3'
miRNA:   3'- -CUUGCGaGUCGUgG-GCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 121561 0.74 0.594685
Target:  5'- aGGACGCagGGCGCCUGCGGACuCAg- -3'
miRNA:   3'- -CUUGCGagUCGUGGGCGUCUGuGUgc -5'
16088 3' -55.8 NC_004065.1 + 124112 0.67 0.941178
Target:  5'- ---gGCUCAGCGCCgCGaucGACAC-CGg -3'
miRNA:   3'- cuugCGAGUCGUGG-GCgu-CUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 124435 0.67 0.93165
Target:  5'- aGGACGUgcugCAGCgacucgaaGCCCGCcGACgGCGCGc -3'
miRNA:   3'- -CUUGCGa---GUCG--------UGGGCGuCUG-UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.