miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 229255 0.7 0.831968
Target:  5'- gGAACGCUCgaaggucgAGCgcgaACCCGCGacgcGGCACGCu -3'
miRNA:   3'- -CUUGCGAG--------UCG----UGGGCGU----CUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 228971 0.68 0.903833
Target:  5'- gGAACGgaCAGCgAUCCGC-GACACgaACGg -3'
miRNA:   3'- -CUUGCgaGUCG-UGGGCGuCUGUG--UGC- -5'
16088 3' -55.8 NC_004065.1 + 228452 0.66 0.95378
Target:  5'- aGACGga-GGuCGCUCGCAGGCACGCc -3'
miRNA:   3'- cUUGCgagUC-GUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 227932 0.67 0.93165
Target:  5'- -cACGCUCGGCAUaCGCGcGCAgCGCGu -3'
miRNA:   3'- cuUGCGAGUCGUGgGCGUcUGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 210020 0.71 0.780153
Target:  5'- cAGCGUcagcaaCAGCAgUCGCGGACGCACa -3'
miRNA:   3'- cUUGCGa-----GUCGUgGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 205530 0.7 0.806742
Target:  5'- cGGCGCUCAGgGCCgGCGGcggugccaucuACGCGCc -3'
miRNA:   3'- cUUGCGAGUCgUGGgCGUC-----------UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 202187 0.78 0.374923
Target:  5'- uGAUGUUCaggcggccgAGCACCCGCAGGCACAuCGg -3'
miRNA:   3'- cUUGCGAG---------UCGUGGGCGUCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 200885 0.66 0.95378
Target:  5'- cAGgGCUCGGCuGCCCGUc-GCGCugGg -3'
miRNA:   3'- cUUgCGAGUCG-UGGGCGucUGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 199703 0.67 0.920112
Target:  5'- -cACGCUCAGCaccgacucgacgcgaAaaggauccugcccgaCCCGCAGGCcCACGa -3'
miRNA:   3'- cuUGCGAGUCG---------------U---------------GGGCGUCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 199033 0.73 0.63468
Target:  5'- aGugGCUCAGCGCCCGaCGcGGCgaGCGCa -3'
miRNA:   3'- cUugCGAGUCGUGGGC-GU-CUG--UGUGc -5'
16088 3' -55.8 NC_004065.1 + 197798 0.68 0.884447
Target:  5'- -cGCGUUggucacCAGCGCCCGCGG-CGcCACGu -3'
miRNA:   3'- cuUGCGA------GUCGUGGGCGUCuGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 197175 0.66 0.95378
Target:  5'- gGGACGC-CAGCucCCCGCGGuucgACugGu -3'
miRNA:   3'- -CUUGCGaGUCGu-GGGCGUCug--UGugC- -5'
16088 3' -55.8 NC_004065.1 + 191268 0.68 0.897591
Target:  5'- uGugGaaaCGGUACUCGCGGGCACGCc -3'
miRNA:   3'- cUugCga-GUCGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 188351 0.74 0.574817
Target:  5'- cGAUGCUCAGC-CCCaGCgaggGGGCGCACGu -3'
miRNA:   3'- cUUGCGAGUCGuGGG-CG----UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 187929 0.69 0.847928
Target:  5'- -cACGUacgUCGGCGCCgGC-GACGCGCa -3'
miRNA:   3'- cuUGCG---AGUCGUGGgCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 187351 0.66 0.94517
Target:  5'- cGAACGCgagcagcuucgcgUCAGCGuCCCgaucuuugccaGCuGGCGCGCGg -3'
miRNA:   3'- -CUUGCG-------------AGUCGU-GGG-----------CGuCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 186917 0.71 0.761778
Target:  5'- cGAGCGCggaUCGGCGCCggguCGCGGAUGCcCGg -3'
miRNA:   3'- -CUUGCG---AGUCGUGG----GCGUCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 175560 0.67 0.915643
Target:  5'- -uGCGCgu-GCGCUCGCGGcagaccGCGCGCGa -3'
miRNA:   3'- cuUGCGaguCGUGGGCGUC------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 170755 0.66 0.95531
Target:  5'- aAACGCUaagCAGCACgaCGCggcuaaguaagcgaaGGACACACa -3'
miRNA:   3'- cUUGCGA---GUCGUGg-GCG---------------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 166467 0.67 0.926543
Target:  5'- -cACGgaCAGCACggGCGGugACACGu -3'
miRNA:   3'- cuUGCgaGUCGUGggCGUCugUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.