miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 165650 0.69 0.847928
Target:  5'- --cUGCUCGGacagaGCCUGCGGACGCGa- -3'
miRNA:   3'- cuuGCGAGUCg----UGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 165379 0.67 0.941178
Target:  5'- ---gGC-CAGCA-CgGCGGACGCGCGg -3'
miRNA:   3'- cuugCGaGUCGUgGgCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 163908 0.66 0.949802
Target:  5'- -cGCGC-CAGCGCCuCGguGAUgucgccccccaGCGCGu -3'
miRNA:   3'- cuUGCGaGUCGUGG-GCguCUG-----------UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 163418 0.66 0.961084
Target:  5'- aGAGCG-UCGGCAacgCCGCGGugGC-CGc -3'
miRNA:   3'- -CUUGCgAGUCGUg--GGCGUCugUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 161690 0.67 0.93165
Target:  5'- cAGCuGCUgCAGCAgcuCCCGCAGcCACgACGa -3'
miRNA:   3'- cUUG-CGA-GUCGU---GGGCGUCuGUG-UGC- -5'
16088 3' -55.8 NC_004065.1 + 161579 0.68 0.90985
Target:  5'- ---gGCUCuuCACCugcgaguugCGCAGGCACACGa -3'
miRNA:   3'- cuugCGAGucGUGG---------GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 161227 0.69 0.863139
Target:  5'- --uCGCgCAGCGCCCGCAcguucuccGACACGg- -3'
miRNA:   3'- cuuGCGaGUCGUGGGCGU--------CUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 159483 0.73 0.633679
Target:  5'- ---aGCUCGuucucucGCGCCUGCAGGCGCGCc -3'
miRNA:   3'- cuugCGAGU-------CGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 155305 0.66 0.949802
Target:  5'- cGAACGCUa--CugUCGCAGGCGCccGCGc -3'
miRNA:   3'- -CUUGCGAgucGugGGCGUCUGUG--UGC- -5'
16088 3' -55.8 NC_004065.1 + 152269 0.66 0.957539
Target:  5'- ---aGCUC-GCACa-GCAGGCACACc -3'
miRNA:   3'- cuugCGAGuCGUGggCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 152216 0.7 0.789154
Target:  5'- -uGCGCUCccgcAGCugCUGCAGGaACACGu -3'
miRNA:   3'- cuUGCGAG----UCGugGGCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 151358 0.66 0.95378
Target:  5'- cGGGCGCcgCGGCGCCgGCcgcuGCGCugGc -3'
miRNA:   3'- -CUUGCGa-GUCGUGGgCGuc--UGUGugC- -5'
16088 3' -55.8 NC_004065.1 + 150810 0.66 0.961084
Target:  5'- -cACGCUCGGguCUCGCAGGauCugGu -3'
miRNA:   3'- cuUGCGAGUCguGGGCGUCUguGugC- -5'
16088 3' -55.8 NC_004065.1 + 150364 0.71 0.768263
Target:  5'- -cACGUUCGGCACCucccgggucaucagCGCcGACACGCa -3'
miRNA:   3'- cuUGCGAGUCGUGG--------------GCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 144319 0.69 0.840039
Target:  5'- aGGCGUUCAGCGCCUcguaGCGGAUgaugggguACAUGg -3'
miRNA:   3'- cUUGCGAGUCGUGGG----CGUCUG--------UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 142824 0.72 0.714067
Target:  5'- --cCGCUUcaAGUACCUGCGGuCGCGCGa -3'
miRNA:   3'- cuuGCGAG--UCGUGGGCGUCuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 139664 0.68 0.903833
Target:  5'- cGGCGCgugCGGCGgCCGCugcuGuCACACGu -3'
miRNA:   3'- cUUGCGa--GUCGUgGGCGu---CuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 138535 0.69 0.870448
Target:  5'- uGGCGCUCgaacgcggcacgAGCGgCgGCGGACugACGg -3'
miRNA:   3'- cUUGCGAG------------UCGUgGgCGUCUGugUGC- -5'
16088 3' -55.8 NC_004065.1 + 137992 0.69 0.843217
Target:  5'- cGAGCGCgccaAGaGCCCGCGGuccucugcgauugcgGCGCACGg -3'
miRNA:   3'- -CUUGCGag--UCgUGGGCGUC---------------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 135877 0.69 0.870448
Target:  5'- cGAUGUgaUCuGGUACgCGCAGGCACGCGu -3'
miRNA:   3'- cUUGCG--AG-UCGUGgGCGUCUGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.