miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 165650 0.69 0.847928
Target:  5'- --cUGCUCGGacagaGCCUGCGGACGCGa- -3'
miRNA:   3'- cuuGCGAGUCg----UGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 60153 0.7 0.789154
Target:  5'- gGAACGgaUCGGCGCCCGCcauGCACAgGu -3'
miRNA:   3'- -CUUGCg-AGUCGUGGGCGuc-UGUGUgC- -5'
16088 3' -55.8 NC_004065.1 + 55772 0.7 0.806742
Target:  5'- aGAugGCggucUCGGCGCCgaGCAGGCGauCGCGg -3'
miRNA:   3'- -CUugCG----AGUCGUGGg-CGUCUGU--GUGC- -5'
16088 3' -55.8 NC_004065.1 + 70501 0.7 0.812758
Target:  5'- uGAAgGCgauggCGGCGCCCuucucgacggagcuGCAGGCGCGCc -3'
miRNA:   3'- -CUUgCGa----GUCGUGGG--------------CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 128445 0.7 0.815312
Target:  5'- uGAGCGCggcggaGGCGUCCGCGGGCGCGa- -3'
miRNA:   3'- -CUUGCGag----UCGUGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 229255 0.7 0.831968
Target:  5'- gGAACGCUCgaaggucgAGCgcgaACCCGCGacgcGGCACGCu -3'
miRNA:   3'- -CUUGCGAG--------UCG----UGGGCGU----CUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 121376 0.7 0.831968
Target:  5'- cGGGCGC-CAGCGgCaCGCAGA-ACACGa -3'
miRNA:   3'- -CUUGCGaGUCGUgG-GCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 144319 0.69 0.840039
Target:  5'- aGGCGUUCAGCGCCUcguaGCGGAUgaugggguACAUGg -3'
miRNA:   3'- cUUGCGAGUCGUGGG----CGUCUG--------UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 125921 0.69 0.840039
Target:  5'- --cCGCUCGGCACgUGCAGGCcgAC-CGg -3'
miRNA:   3'- cuuGCGAGUCGUGgGCGUCUG--UGuGC- -5'
16088 3' -55.8 NC_004065.1 + 89310 0.71 0.780153
Target:  5'- cGAGCGCggCAGCGaguUCUGCAGgACGCGCu -3'
miRNA:   3'- -CUUGCGa-GUCGU---GGGCGUC-UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 124957 0.71 0.779246
Target:  5'- -uGCGCggCAGCGCCUGCAcgaagggcggccaGAgGCGCGg -3'
miRNA:   3'- cuUGCGa-GUCGUGGGCGU-------------CUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 150364 0.71 0.768263
Target:  5'- -cACGUUCGGCACCucccgggucaucagCGCcGACACGCa -3'
miRNA:   3'- cuUGCGAGUCGUGG--------------GCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 88665 0.77 0.433637
Target:  5'- cGAGCGCcgcCAGCACCCGCGaGCGgACGa -3'
miRNA:   3'- -CUUGCGa--GUCGUGGGCGUcUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 61514 0.76 0.497353
Target:  5'- aGAACGCggcgaCAGCAuCCCGCAGGCGauCGCa -3'
miRNA:   3'- -CUUGCGa----GUCGU-GGGCGUCUGU--GUGc -5'
16088 3' -55.8 NC_004065.1 + 121561 0.74 0.594685
Target:  5'- aGGACGCagGGCGCCUGCGGACuCAg- -3'
miRNA:   3'- -CUUGCGagUCGUGGGCGUCUGuGUgc -5'
16088 3' -55.8 NC_004065.1 + 59707 0.72 0.704289
Target:  5'- aGGGCGCcgAGCGgCCGCGG-CGCACGg -3'
miRNA:   3'- -CUUGCGagUCGUgGGCGUCuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 142824 0.72 0.714067
Target:  5'- --cCGCUUcaAGUACCUGCGGuCGCGCGa -3'
miRNA:   3'- cuuGCGAG--UCGUGGGCGUCuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 125188 0.72 0.723777
Target:  5'- cGAACGC-CAGCAggcCCCGCuGACGC-Ca -3'
miRNA:   3'- -CUUGCGaGUCGU---GGGCGuCUGUGuGc -5'
16088 3' -55.8 NC_004065.1 + 102396 0.72 0.733412
Target:  5'- aGAACaCUCAGCGCCuCGUcGACGgACGg -3'
miRNA:   3'- -CUUGcGAGUCGUGG-GCGuCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 98641 0.72 0.733412
Target:  5'- -uGCGCUCGGuCGCUCGUAcGuACGCGCGg -3'
miRNA:   3'- cuUGCGAGUC-GUGGGCGU-C-UGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.