miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 61514 0.76 0.497353
Target:  5'- aGAACGCggcgaCAGCAuCCCGCAGGCGauCGCa -3'
miRNA:   3'- -CUUGCGa----GUCGU-GGGCGUCUGU--GUGc -5'
16088 3' -55.8 NC_004065.1 + 88665 0.77 0.433637
Target:  5'- cGAGCGCcgcCAGCACCCGCGaGCGgACGa -3'
miRNA:   3'- -CUUGCGa--GUCGUGGGCGUcUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 107321 1.08 0.005249
Target:  5'- aGAACGCUCAGCACCCGCAGACACACGc -3'
miRNA:   3'- -CUUGCGAGUCGUGGGCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 55772 0.7 0.806742
Target:  5'- aGAugGCggucUCGGCGCCgaGCAGGCGauCGCGg -3'
miRNA:   3'- -CUugCG----AGUCGUGGg-CGUCUGU--GUGC- -5'
16088 3' -55.8 NC_004065.1 + 70501 0.7 0.812758
Target:  5'- uGAAgGCgauggCGGCGCCCuucucgacggagcuGCAGGCGCGCc -3'
miRNA:   3'- -CUUgCGa----GUCGUGGG--------------CGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 42873 0.68 0.897591
Target:  5'- gGGACGC-CAcGCACCUGUcgaaagAGACACAUc -3'
miRNA:   3'- -CUUGCGaGU-CGUGGGCG------UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 197798 0.68 0.884447
Target:  5'- -cGCGUUggucacCAGCGCCCGCGG-CGcCACGu -3'
miRNA:   3'- cuUGCGA------GUCGUGGGCGUCuGU-GUGC- -5'
16088 3' -55.8 NC_004065.1 + 117393 0.68 0.877552
Target:  5'- cGACGCUCGGCcgcGCgCGCuGGGCuCGCGg -3'
miRNA:   3'- cUUGCGAGUCG---UGgGCG-UCUGuGUGC- -5'
16088 3' -55.8 NC_004065.1 + 135877 0.69 0.870448
Target:  5'- cGAUGUgaUCuGGUACgCGCAGGCACGCGu -3'
miRNA:   3'- cUUGCG--AG-UCGUGgGCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 138535 0.69 0.870448
Target:  5'- uGGCGCUCgaacgcggcacgAGCGgCgGCGGACugACGg -3'
miRNA:   3'- cUUGCGAG------------UCGUgGgCGUCUGugUGC- -5'
16088 3' -55.8 NC_004065.1 + 103143 0.69 0.85563
Target:  5'- aGGCGUUCAGCACgCGUAG-CAC-CGc -3'
miRNA:   3'- cUUGCGAGUCGUGgGCGUCuGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 1019 0.69 0.85563
Target:  5'- cGAGCGU---GC-CCCGCAGGCAgGCGc -3'
miRNA:   3'- -CUUGCGaguCGuGGGCGUCUGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 165650 0.69 0.847928
Target:  5'- --cUGCUCGGacagaGCCUGCGGACGCGa- -3'
miRNA:   3'- cuuGCGAGUCg----UGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 125921 0.69 0.840039
Target:  5'- --cCGCUCGGCACgUGCAGGCcgAC-CGg -3'
miRNA:   3'- cuuGCGAGUCGUGgGCGUCUG--UGuGC- -5'
16088 3' -55.8 NC_004065.1 + 144319 0.69 0.840039
Target:  5'- aGGCGUUCAGCGCCUcguaGCGGAUgaugggguACAUGg -3'
miRNA:   3'- cUUGCGAGUCGUGGG----CGUCUG--------UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 121376 0.7 0.831968
Target:  5'- cGGGCGC-CAGCGgCaCGCAGA-ACACGa -3'
miRNA:   3'- -CUUGCGaGUCGUgG-GCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 229255 0.7 0.831968
Target:  5'- gGAACGCUCgaaggucgAGCgcgaACCCGCGacgcGGCACGCu -3'
miRNA:   3'- -CUUGCGAG--------UCG----UGGGCGU----CUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 128445 0.7 0.815312
Target:  5'- uGAGCGCggcggaGGCGUCCGCGGGCGCGa- -3'
miRNA:   3'- -CUUGCGag----UCGUGGGCGUCUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 23189 0.66 0.961084
Target:  5'- uGAuCGCcuuUCGGCugguguaucugACCgUGCAGGCGCACGg -3'
miRNA:   3'- -CUuGCG---AGUCG-----------UGG-GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 188351 0.74 0.574817
Target:  5'- cGAUGCUCAGC-CCCaGCgaggGGGCGCACGu -3'
miRNA:   3'- cUUGCGAGUCGuGGG-CG----UCUGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.