miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 202187 0.78 0.374923
Target:  5'- uGAUGUUCaggcggccgAGCACCCGCAGGCACAuCGg -3'
miRNA:   3'- cUUGCGAG---------UCGUGGGCGUCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 63847 0.69 0.870448
Target:  5'- uGGAUGCUCAGaCACaUCGCGGuGCAgACGu -3'
miRNA:   3'- -CUUGCGAGUC-GUG-GGCGUC-UGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 191268 0.68 0.897591
Target:  5'- uGugGaaaCGGUACUCGCGGGCACGCc -3'
miRNA:   3'- cUugCga-GUCGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 23189 0.66 0.961084
Target:  5'- uGAuCGCcuuUCGGCugguguaucugACCgUGCAGGCGCACGg -3'
miRNA:   3'- -CUuGCG---AGUCG-----------UGG-GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 199033 0.73 0.63468
Target:  5'- aGugGCUCAGCGCCCGaCGcGGCgaGCGCa -3'
miRNA:   3'- cUugCGAGUCGUGGGC-GU-CUG--UGUGc -5'
16088 3' -55.8 NC_004065.1 + 59005 0.73 0.674641
Target:  5'- uGACGUUCAGUGuCCCGUGGGCAgACa -3'
miRNA:   3'- cUUGCGAGUCGU-GGGCGUCUGUgUGc -5'
16088 3' -55.8 NC_004065.1 + 186917 0.71 0.761778
Target:  5'- cGAGCGCggaUCGGCGCCggguCGCGGAUGCcCGg -3'
miRNA:   3'- -CUUGCG---AGUCGUGG----GCGUCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 210020 0.71 0.780153
Target:  5'- cAGCGUcagcaaCAGCAgUCGCGGACGCACa -3'
miRNA:   3'- cUUGCGa-----GUCGUgGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 84254 0.7 0.815312
Target:  5'- --gUGCg-AGCGCCCGCGaccGGCGCGCGa -3'
miRNA:   3'- cuuGCGagUCGUGGGCGU---CUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 108543 0.69 0.863139
Target:  5'- --uCGCcaccuUCA-CGCCCGCGGACGCGCc -3'
miRNA:   3'- cuuGCG-----AGUcGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 137992 0.69 0.843217
Target:  5'- cGAGCGCgccaAGaGCCCGCGGuccucugcgauugcgGCGCACGg -3'
miRNA:   3'- -CUUGCGag--UCgUGGGCGUC---------------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 205530 0.7 0.806742
Target:  5'- cGGCGCUCAGgGCCgGCGGcggugccaucuACGCGCc -3'
miRNA:   3'- cUUGCGAGUCgUGGgCGUC-----------UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 188351 0.74 0.574817
Target:  5'- cGAUGCUCAGC-CCCaGCgaggGGGCGCACGu -3'
miRNA:   3'- cUUGCGAGUCGuGGG-CG----UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 187929 0.69 0.847928
Target:  5'- -cACGUacgUCGGCGCCgGC-GACGCGCa -3'
miRNA:   3'- cuUGCG---AGUCGUGGgCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 86516 0.74 0.598673
Target:  5'- aGGACGCUgcucaCAGCAuCCCGggcgaaguggggaucCAGACGCACGg -3'
miRNA:   3'- -CUUGCGA-----GUCGU-GGGC---------------GUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 152216 0.7 0.789154
Target:  5'- -uGCGCUCccgcAGCugCUGCAGGaACACGu -3'
miRNA:   3'- cuUGCGAG----UCGugGGCGUCUgUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 161227 0.69 0.863139
Target:  5'- --uCGCgCAGCGCCCGCAcguucuccGACACGg- -3'
miRNA:   3'- cuuGCGaGUCGUGGGCGU--------CUGUGUgc -5'
16088 3' -55.8 NC_004065.1 + 81206 0.68 0.891128
Target:  5'- cAACGCgCAGUACCgCGCGGACu--CGg -3'
miRNA:   3'- cUUGCGaGUCGUGG-GCGUCUGuguGC- -5'
16088 3' -55.8 NC_004065.1 + 159483 0.73 0.633679
Target:  5'- ---aGCUCGuucucucGCGCCUGCAGGCGCGCc -3'
miRNA:   3'- cuugCGAGU-------CGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 31385 0.71 0.742963
Target:  5'- -cACGCU--GCACCUGguGGCGCGCa -3'
miRNA:   3'- cuUGCGAguCGUGGGCguCUGUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.