miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 3' -55.8 NC_004065.1 + 88915 0.68 0.903833
Target:  5'- uGAGCGCgUCGGCGaugCCGCugaAGGCGCGgCGg -3'
miRNA:   3'- -CUUGCG-AGUCGUg--GGCG---UCUGUGU-GC- -5'
16088 3' -55.8 NC_004065.1 + 191268 0.68 0.897591
Target:  5'- uGugGaaaCGGUACUCGCGGGCACGCc -3'
miRNA:   3'- cUugCga-GUCGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 205530 0.7 0.806742
Target:  5'- cGGCGCUCAGgGCCgGCGGcggugccaucuACGCGCc -3'
miRNA:   3'- cUUGCGAGUCgUGGgCGUC-----------UGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 159483 0.73 0.633679
Target:  5'- ---aGCUCGuucucucGCGCCUGCAGGCGCGCc -3'
miRNA:   3'- cuugCGAGU-------CGUGGGCGUCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 36167 0.67 0.941178
Target:  5'- cGGCGCugugUCAGcCGCUCGCggggGGGCGCGCa -3'
miRNA:   3'- cUUGCG----AGUC-GUGGGCG----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 175560 0.67 0.915643
Target:  5'- -uGCGCgu-GCGCUCGCGGcagaccGCGCGCGa -3'
miRNA:   3'- cuUGCGaguCGUGGGCGUC------UGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 63847 0.69 0.870448
Target:  5'- uGGAUGCUCAGaCACaUCGCGGuGCAgACGu -3'
miRNA:   3'- -CUUGCGAGUC-GUG-GGCGUC-UGUgUGC- -5'
16088 3' -55.8 NC_004065.1 + 86516 0.74 0.598673
Target:  5'- aGGACGCUgcucaCAGCAuCCCGggcgaaguggggaucCAGACGCACGg -3'
miRNA:   3'- -CUUGCGA-----GUCGU-GGGC---------------GUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 161579 0.68 0.90985
Target:  5'- ---gGCUCuuCACCugcgaguugCGCAGGCACACGa -3'
miRNA:   3'- cuugCGAGucGUGG---------GCGUCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 188351 0.74 0.574817
Target:  5'- cGAUGCUCAGC-CCCaGCgaggGGGCGCACGu -3'
miRNA:   3'- cUUGCGAGUCGuGGG-CG----UCUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 81206 0.68 0.891128
Target:  5'- cAACGCgCAGUACCgCGCGGACu--CGg -3'
miRNA:   3'- cUUGCGaGUCGUGG-GCGUCUGuguGC- -5'
16088 3' -55.8 NC_004065.1 + 139664 0.68 0.903833
Target:  5'- cGGCGCgugCGGCGgCCGCugcuGuCACACGu -3'
miRNA:   3'- cUUGCGa--GUCGUgGGCGu---CuGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 187929 0.69 0.847928
Target:  5'- -cACGUacgUCGGCGCCgGC-GACGCGCa -3'
miRNA:   3'- cuUGCG---AGUCGUGGgCGuCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 84254 0.7 0.815312
Target:  5'- --gUGCg-AGCGCCCGCGaccGGCGCGCGa -3'
miRNA:   3'- cuuGCGagUCGUGGGCGU---CUGUGUGC- -5'
16088 3' -55.8 NC_004065.1 + 186917 0.71 0.761778
Target:  5'- cGAGCGCggaUCGGCGCCggguCGCGGAUGCcCGg -3'
miRNA:   3'- -CUUGCG---AGUCGUGG----GCGUCUGUGuGC- -5'
16088 3' -55.8 NC_004065.1 + 199033 0.73 0.63468
Target:  5'- aGugGCUCAGCGCCCGaCGcGGCgaGCGCa -3'
miRNA:   3'- cUugCGAGUCGUGGGC-GU-CUG--UGUGc -5'
16088 3' -55.8 NC_004065.1 + 80322 0.66 0.94517
Target:  5'- cGGCGCggccgCGGCcccccggcguucgACCUGCAGACccuggACACGg -3'
miRNA:   3'- cUUGCGa----GUCG-------------UGGGCGUCUG-----UGUGC- -5'
16088 3' -55.8 NC_004065.1 + 47607 0.67 0.941178
Target:  5'- --cUGCcCAGCGCCCccucgaGGACACACa -3'
miRNA:   3'- cuuGCGaGUCGUGGGcg----UCUGUGUGc -5'
16088 3' -55.8 NC_004065.1 + 161690 0.67 0.93165
Target:  5'- cAGCuGCUgCAGCAgcuCCCGCAGcCACgACGa -3'
miRNA:   3'- cUUG-CGA-GUCGU---GGGCGUCuGUG-UGC- -5'
16088 3' -55.8 NC_004065.1 + 104248 0.67 0.915643
Target:  5'- aGGCGCUCAagacucucuGCcacCCCGC-GAUACACGa -3'
miRNA:   3'- cUUGCGAGU---------CGu--GGGCGuCUGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.