miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 5' -58.3 NC_004065.1 + 94421 0.66 0.906456
Target:  5'- cCGCGUGa-CGGCCGucuccCAGCGgcGCGUg -3'
miRNA:   3'- -GCGCAUcaGCCGGCu----GUCGCa-CGCAa -5'
16088 5' -58.3 NC_004065.1 + 46164 0.66 0.904669
Target:  5'- uGCGU--UCGGCCacggccaaacacgcGACGGCGUGgGg- -3'
miRNA:   3'- gCGCAucAGCCGG--------------CUGUCGCACgCaa -5'
16088 5' -58.3 NC_004065.1 + 201194 0.66 0.900424
Target:  5'- gCGCGUcccggcucGGgCGGCgCGGCGaCGUGCGUg -3'
miRNA:   3'- -GCGCA--------UCaGCCG-GCUGUcGCACGCAa -5'
16088 5' -58.3 NC_004065.1 + 200786 0.66 0.900424
Target:  5'- gCGCGgcGguggCGGgCGACGGCGUcucggcGCGg- -3'
miRNA:   3'- -GCGCauCa---GCCgGCUGUCGCA------CGCaa -5'
16088 5' -58.3 NC_004065.1 + 67449 0.66 0.900424
Target:  5'- aCGaCGgaccuGUCGGCCGagGCGGCG-GUGUa -3'
miRNA:   3'- -GC-GCau---CAGCCGGC--UGUCGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 128750 0.66 0.894178
Target:  5'- aGCc--GUCGGCagCGGCAGCGgcaGCGUUg -3'
miRNA:   3'- gCGcauCAGCCG--GCUGUCGCa--CGCAA- -5'
16088 5' -58.3 NC_004065.1 + 24962 0.66 0.894178
Target:  5'- aCGaugGGUCGGUCGugGGUGgGCGUc -3'
miRNA:   3'- -GCgcaUCAGCCGGCugUCGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 137860 0.66 0.894178
Target:  5'- cCGCGUcGaUCGccGCCGACAGCGU-CGg- -3'
miRNA:   3'- -GCGCAuC-AGC--CGGCUGUCGCAcGCaa -5'
16088 5' -58.3 NC_004065.1 + 127481 0.66 0.894178
Target:  5'- --gGUGGUCGGgCG-CGGCGggaGCGUUg -3'
miRNA:   3'- gcgCAUCAGCCgGCuGUCGCa--CGCAA- -5'
16088 5' -58.3 NC_004065.1 + 67749 0.66 0.894178
Target:  5'- aGCGgcGcCGcGuCCGACGGCGUGaCGa- -3'
miRNA:   3'- gCGCauCaGC-C-GGCUGUCGCAC-GCaa -5'
16088 5' -58.3 NC_004065.1 + 106975 0.66 0.88772
Target:  5'- aGCGaGGUCGGCCaugcucGCcGCGUGCa-- -3'
miRNA:   3'- gCGCaUCAGCCGGc-----UGuCGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 108804 0.66 0.874185
Target:  5'- gGCGUGG-CGGCCGuuCAGCc-GCGg- -3'
miRNA:   3'- gCGCAUCaGCCGGCu-GUCGcaCGCaa -5'
16088 5' -58.3 NC_004065.1 + 73866 0.67 0.85985
Target:  5'- aGUGUuGaUCGGaCCGGCAGCGccgGUGUUg -3'
miRNA:   3'- gCGCAuC-AGCC-GGCUGUCGCa--CGCAA- -5'
16088 5' -58.3 NC_004065.1 + 59322 0.67 0.852395
Target:  5'- aGCGgcaaUCGcGCCGcggGCGGCGUGCGa- -3'
miRNA:   3'- gCGCauc-AGC-CGGC---UGUCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 38121 0.67 0.852395
Target:  5'- uGcCGUAcGUCGcGCCGGacuuCGGCGUGCGc- -3'
miRNA:   3'- gC-GCAU-CAGC-CGGCU----GUCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 99390 0.67 0.844756
Target:  5'- gGCGUGGgCuGCCuGGCGGCGggcGCGUUg -3'
miRNA:   3'- gCGCAUCaGcCGG-CUGUCGCa--CGCAA- -5'
16088 5' -58.3 NC_004065.1 + 135638 0.67 0.836939
Target:  5'- aGCaGUGccUCGGCCGACAGCGaccuagacccucUGCGg- -3'
miRNA:   3'- gCG-CAUc-AGCCGGCUGUCGC------------ACGCaa -5'
16088 5' -58.3 NC_004065.1 + 209551 0.67 0.836939
Target:  5'- cCGCGggacugaaggAGgccCGGCCGGCugcuggcgGGCGUGCGg- -3'
miRNA:   3'- -GCGCa---------UCa--GCCGGCUG--------UCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 116314 0.67 0.836939
Target:  5'- uGuCGgcGUCGGCggCGGCAGCGgcgacgGCGUc -3'
miRNA:   3'- gC-GCauCAGCCG--GCUGUCGCa-----CGCAa -5'
16088 5' -58.3 NC_004065.1 + 115753 0.67 0.82895
Target:  5'- aCGC--AGUCGGCCGGgaAGCGgagGCGg- -3'
miRNA:   3'- -GCGcaUCAGCCGGCUg-UCGCa--CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.