miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 5' -58.3 NC_004065.1 + 107355 1.06 0.004425
Target:  5'- cCGCGUAGUCGGCCGACAGCGUGCGUUg -3'
miRNA:   3'- -GCGCAUCAGCCGGCUGUCGCACGCAA- -5'
16088 5' -58.3 NC_004065.1 + 65315 0.79 0.249363
Target:  5'- cCGCGUGGUgGGaCCGGCGGCGgcgGCGg- -3'
miRNA:   3'- -GCGCAUCAgCC-GGCUGUCGCa--CGCaa -5'
16088 5' -58.3 NC_004065.1 + 28481 0.74 0.481515
Target:  5'- uGUGgcGUCuGGCCGACAGCGccGCGg- -3'
miRNA:   3'- gCGCauCAG-CCGGCUGUCGCa-CGCaa -5'
16088 5' -58.3 NC_004065.1 + 31914 0.73 0.518553
Target:  5'- aCGCGgcgcGUC-GCCGACAGCGUGCc-- -3'
miRNA:   3'- -GCGCau--CAGcCGGCUGUCGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 105106 0.73 0.537494
Target:  5'- gCGCGUGGU-GGCCGACGaCGUGCc-- -3'
miRNA:   3'- -GCGCAUCAgCCGGCUGUcGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 122674 0.72 0.576033
Target:  5'- aCGCu--GUCGGCCGACuacgcggacacgAGCGUGUGUc -3'
miRNA:   3'- -GCGcauCAGCCGGCUG------------UCGCACGCAa -5'
16088 5' -58.3 NC_004065.1 + 129014 0.71 0.644647
Target:  5'- uCGCGccUGG-CGGCCGACu-CGUGCGUg -3'
miRNA:   3'- -GCGC--AUCaGCCGGCUGucGCACGCAa -5'
16088 5' -58.3 NC_004065.1 + 101421 0.7 0.683802
Target:  5'- -cCGUGGgggCGGCUGGC-GCGUGCGg- -3'
miRNA:   3'- gcGCAUCa--GCCGGCUGuCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 113001 0.69 0.722324
Target:  5'- aGCGUcucGGUCGGCaCGugAGCGcGCa-- -3'
miRNA:   3'- gCGCA---UCAGCCG-GCugUCGCaCGcaa -5'
16088 5' -58.3 NC_004065.1 + 128888 0.69 0.750493
Target:  5'- -uCGUG--CGGCCGAgGGCGUGCGa- -3'
miRNA:   3'- gcGCAUcaGCCGGCUgUCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 136675 0.69 0.768806
Target:  5'- gGCG-GGUCuGGCCGGCGGCGgGCc-- -3'
miRNA:   3'- gCGCaUCAG-CCGGCUGUCGCaCGcaa -5'
16088 5' -58.3 NC_004065.1 + 27210 0.68 0.777798
Target:  5'- gGCGgcGgucgUGGUCGGCAGCGUGUu-- -3'
miRNA:   3'- gCGCauCa---GCCGGCUGUCGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 139902 0.68 0.777798
Target:  5'- cCGCGgGGccucCGGCCGGCGGCGccaGCGg- -3'
miRNA:   3'- -GCGCaUCa---GCCGGCUGUCGCa--CGCaa -5'
16088 5' -58.3 NC_004065.1 + 168561 0.68 0.777798
Target:  5'- aGCGgcGgCGGCggCGACAGCGgGCGUc -3'
miRNA:   3'- gCGCauCaGCCG--GCUGUCGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 165273 0.68 0.786669
Target:  5'- aGCGcuccUUGGCCGACAGCGaGCGc- -3'
miRNA:   3'- gCGCauc-AGCCGGCUGUCGCaCGCaa -5'
16088 5' -58.3 NC_004065.1 + 164549 0.68 0.786669
Target:  5'- uCGCuGU-GUCGaGCCGGCGGCG-GCGc- -3'
miRNA:   3'- -GCG-CAuCAGC-CGGCUGUCGCaCGCaa -5'
16088 5' -58.3 NC_004065.1 + 99952 0.68 0.80402
Target:  5'- uCGcCGUAGUCGaccaccGCCG-CGGCGUGCu-- -3'
miRNA:   3'- -GC-GCAUCAGC------CGGCuGUCGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 123624 0.68 0.812483
Target:  5'- aGCGgaagaacuccaGGUCGGCCGACAcCG-GCGUc -3'
miRNA:   3'- gCGCa----------UCAGCCGGCUGUcGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 33469 0.68 0.820796
Target:  5'- aCGCGUucgCGGCCGugGGCGccuacGCGc- -3'
miRNA:   3'- -GCGCAucaGCCGGCugUCGCa----CGCaa -5'
16088 5' -58.3 NC_004065.1 + 115753 0.67 0.82895
Target:  5'- aCGC--AGUCGGCCGGgaAGCGgagGCGg- -3'
miRNA:   3'- -GCGcaUCAGCCGGCUg-UCGCa--CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.